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                    Input File:SRR1563060

 ---- Mapping parameters and Annotations ---- 
Number of allowed mismatches: 1 (mm=1)
Alignment type: seed alignment (alignType=n)
Length of the seed: 20 (seed=20)

Used genome assembly bowtie1 index: GRCh38_p10_mp:NC_007605
 ---- ANNOTATIONS ---- 
Used miRNAs reference species from miRBase v22
Used miRNAs for species: hsa:ebv
Used ncRNA annotations: 
   libs=GRCh38_p10_genomic_tRNA (Genomic tRNA database)
   libs=hsa_yRNA (yRNAs)
   libs=vRNA (vault RNAs)
   libs=GRCh38_p10_ncRNA (Ensembl release 91 (ncRNA))
   libs=GRCh38_p10_cdna (Ensembl release 91 (cDNA))
   libs=GRCh38_p10_RNAcentral (RNAcentral database 7.0)

 ---- Preprocessing and adapter trimming parameters: ---- 
Unknown protocol: Illumina

 ---No quality filtering was used (only reads with ambigous bases are filtered out- ---

                        


                    Number of Raw input reads      : 6203008
Number of adapter trimmed reads: 6114811 (98.57815756484595)
--- Number of filtered reads ---- 
   Quality Filtered Reads     : 18872 
   Reads below min read count : 309386 
   Reads above max. length    : 0 
   Reads below min. length    : 1457621 
   Percentage of AdapterDimer : 3.4880611813859517 

 Reads in analysis: 4328932 (69.7876256164751)

                        

Profiling results by rna type.



Genome/Library mapping results

Unique Genome mapped reads:
79640(88.25%)
Genome mapped reads:
3802748(87.84%)

Graphical Summary

Download BedGraph data for UCSC/Ensemble browser




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MiR profiling results

Detected mature miR:
566 (20.96%)
Reads mapped to miRBase hairpins:
2383 (0.07%)
Detected hairpin miR:
393 (20.24%)
Reads mapped to miRNAs:
788123 (23.07%)

Download profiling results

miRNA profile (Multiple Assignment):
Download
miRNA profile (Single Assignment):
Download
isomiR profile:
Download
isomiR annotation:
Download
MicroRNA details:
isomiR details:
Genomic tRNA database
Mapped reads in antisense direction:
13(0.0%)
MA antisense
SA antisense
Mapped reads in sense direction:
211344(6.19%)
multiple assignment (MA)
single assignment (SA)
yRNAs
Mapped reads in antisense direction:
0(0.0%)
MA antisense
SA antisense
Mapped reads in sense direction:
1461807(42.8%)
multiple assignment (MA)
single assignment (SA)
vault RNAs
Mapped reads in antisense direction:
0(0.0%)
MA antisense
SA antisense
Mapped reads in sense direction:
7453(0.22%)
multiple assignment (MA)
single assignment (SA)
RNAcentral database 7.0
Mapped reads in antisense direction:
12866(0.38%)
MA antisense
SA antisense
Mapped reads in sense direction:
498036(14.58%)
multiple assignment (MA)
single assignment (SA)
Ensembl release 91 (cDNA)
Mapped reads in antisense direction:
62364(1.83%)
MA antisense
SA antisense
Mapped reads in sense direction:
111771(3.27%)
multiple assignment (MA)
single assignment (SA)
Ensembl release 91 (ncRNA)
Mapped reads in antisense direction:
108827(3.19%)
MA antisense
SA antisense
Mapped reads in sense direction:
150548(4.41%)
multiple assignment (MA)
single assignment (SA)
tRNA genes:
details