Usage Statistics and Additional Information

Software and DBs versions

  • mirBase: Release 22
  • miRGeneDB2
  • 92 genomes from Ensembl Release 91
  • 44 genomes from EnsemblPlants Release 37
  • Virus collections from EnsemblGenomes, grouped by host
  • Bacteria collection from EnsemblBacteria v39
  • Nucleotide-Nucleotide BLAST: blastn : blast 2.6.0, build Dec 7 2016
  • miRanda: v3.3a
  • PITA executable: v6
  • tapir: v1.2
  • TargetSpy: v1.1
  • psRobot_tar: v1.2
Run Time Estimations
# Tool Test Data Test Data Time Average Time Number of Successful Jobs
1 sRNAbench IK_exo.fastq.gz 15 min 0 days, 01h: 28m: 23s 29825
2 sRNAde Matrix File 20min 0 days, 00h: 19m: 56s 1231
3 sRNAblast Reads file (taking 500 unique Reads) 20min 0 days, 00h: 16m: 50s 178
4 miRNAconsTarget

miRNAs (3)

3' UTRs

(Run with TargetSpy, Miranda and PITA)

 2h 27min 0 days, 01h: 10m: 19s 1925
Please note that time strongly depends on input data and server load.
Downloads
Link to standalone instructions and downloads