Usage Statistics and Additional Information

Software versions

  • Bowtie 1.3.1
  • Nucleotide-Nucleotide BLAST: blastn : blast 2.6.0, build Dec 7 2016
  • miRanda: v3.3a
  • PITA executable: v6
  • tapir: v1.2
  • TargetSpy: v1.1
  • psRobot_tar: v1.2
Run Time Estimations
# Tool Test Data Test Data Time Average Time Number of Successful Jobs
1 sRNAbench IK_exo.fastq.gz 15 min 0 days, 01h: 37m: 32s 128331
2 sRNAde Matrix File 20min 0 days, 00h: 21m: 56s 3802
3 sRNAblast Reads file (taking 500 unique Reads) 20min 0 days, 00h: 37m: 07s 661
4 miRNAconsTarget

miRNAs (3)

3' UTRs

(Run with TargetSpy, Miranda and PITA)

2h 27min 0 days, 01h: 35m: 37s 4368
Downloads
Link to standalone instructions and downloads