sRNAtoolbox Database Content


sRNAtoolbox 2022 sRNAtoolbox 2019
miRNA annotations PmiREN2.0, MirGeneDB2.1, miRBase (release 22.1) MirGeneDB, miRBase (release 22.1)
Number of different species with miRNA complement 358 293
RNA annotations RNAcentral release 20 (snoRNA, snRNA,...) RNAcentral release 13
Genome assemblies and annotations (animals) Ensembl 104, 350 genomes Ensembl 97, 104 genomes
Genome assemblies and annotations (plants) Ensembl Plants 51, 91 genomes Ensembl Plants 36, 48 genomes
Bacteria collection NCBI Microbial Genomes (one genome per genus), 3004 genomes NCBI Microbial Genomes (one genome per genus), 781 genomes
Bacterial genomes NCBI Microbial Genomes (one genome per species), 9655 genomes Not available
Virus genomes NCBI virus (one genome per species), 10301 genomes Not available

Scientific name Taxon ID Assembly miRNA Other annotations
Persea americana 3435 Not available PmiREN:Pam Not available
Ovis aries 9940 Oar_rambouillet_v1_0 miRBase:oar



Prunus mume 102107 Not available miRBase:pmu Not available
Falco tinnunculus 100819 FalTin1_0 Not available


Sorex araneus 42254 sorAra1 Not available



Carthamus tinctorius 4222 Not available PmiREN:Cti Not available
Mustela putorius furo 9669 MusPutFur1_0 Not available



Danaus plexippus 13037 Dpv3 Not available


Poecilia reticulata 8081 Guppy_female_1_0_MT Not available


Naja naja 35670 Nana_v5 Not available


Human herpesvirus 6B 32604 Not available miRBase:hhv6b Not available
Moschus moschiferus 68415 MosMos_v2_BIUU_UCD Not available


Gouania willdenowi 441366 fGouWil2_1 Not available


Lagothrix lagotricha 9519 Not available miRBase:lla Not available
Mayetiola destructor 39758 Mdes_1_0 miRBase:mde


Marchantia polymorpha 3197 Marchanta_polymorpha_v1 miRBase:mpo

Pteropus alecto 9402 Not available miRBase:pal Not available
Centruroides sculpturatus 218467 Not available MirGeneDB:Csc Not available
Zosterops lateralis melanops 1220523 ASM128173v1 Not available


Ipomoea batatas 4120 Not available PmiREN:Iba Not available
Drosophila pseudoobscura 7237 Not available miRBase:dps Not available
Rhipicephalus microplus 6941 Not available miRBase:rmi Not available
Metriaclima zebra 106582 M_zebra_UMD2a miRBase:mze


Fukomys damarensis 885580 DMR_v1_0 Not available


Strongylocentrotus purpuratus 7668 Not available MirGeneDB:Spu miRBase:spu Not available
Gossypium hirsutum 3635 Not available PmiREN:Ghi miRBase:ghr Not available
Arachis hypogaea 3818 Not available miRBase:ahy Not available
Musa acuminata 214687 Musa_acuminata_v2 Not available

Herpesvirus saimiri strain A11 570519 Not available miRBase:hvsa Not available
Cricetulus griseus 10029 CriGri_1_0 miRBase:cgr

Phytophthora infestans 4787 Not available miRBase:pin Not available
Acacia auriculiformis 205027 Not available miRBase:aau Not available
Pinus densata 190402 Not available miRBase:pde Not available
Eucalyptus grandis 71139 Egrandis1_0 Not available

Nicotiana tabacum 4097 Not available PmiREN:Nta miRBase:nta Not available
Patiria miniata 46514 Not available MirGeneDB:Pmi miRBase:pmi Not available
Blattella germanica 6973 Not available MirGeneDB:Bge Not available
Bombus impatiens 132113 BIMP_2_0 Not available


Zea mays 4577 Zm-B73-REFERENCE-NAM-5_0 PmiREN:Zma miRBase:zma



Beta vulgaris 3555 RefBeet-1_2_2 Not available


Panthera leo 9689 PanLeo1_0 Not available


Cavia porcellus 10141 Cavpor3_0 MirGeneDB:Cpo miRBase:cpo



Nasonia vitripennis 7425 Not available miRBase:nvi Not available
Raccoon polyomavirus 1219896 Not available miRBase:racpv Not available
Erythrura gouldiae 44316 GouldianFinch Not available


Eragrostis curvula 38414 CERZOS_E_curvula1_0 Not available


Helianthus petiolaris 4234 Not available miRBase:hpe Not available
Asparagus officinalis 4686 Aspof_V1 PmiREN:Aof miRBase:aof


Strigamia maritima 126957 Smar1 miRBase:smr


Gyrodactylus salaris 37629 Not available miRBase:gsa Not available
Oryza longistaminata 4528 O_longistaminata_v1_0 Not available


Neovison vison 452646 NNQGG_v01 Not available


Picea abies 3329 Not available PmiREN:Pab miRBase:pab Not available
Bovine foamy virus 207343 Not available miRBase:bfv Not available
Athene cunicularia 194338 athCun1 Not available


Mola mola 94237 ASM169857v1 Not available


Pseudonaja textilis 8673 EBS10Xv2-PRI Not available


Ursus thibetanus thibetanus 441215 ASM966005v1 Not available


Glossina morsitans 37546 GmorY1 Not available



Catharus ustulatus 91951 bCatUst1_pri Not available


Xenoturbella bocki 242395 Not available MirGeneDB:Xbo miRBase:xbo Not available
Zonotrichia albicollis 44394 Zonotrichia_albicollis-1_0_1 Not available


Musca domestica 7370 MdomA1 Not available


Mus pahari 10093 PAHARI_EIJ_v1_1 Not available



Nelumbo nucifera 4432 Not available PmiREN:Nnu Not available
Suricata suricatta 37032 meerkat_22Aug2017_6uvM2_HiC Not available


Mus caroli 10089 CAROLI_EIJ_v1_1 Not available



Pseudorabies virus 10345 Not available miRBase:prv Not available
Helianthus exilis 400408 Not available miRBase:hex Not available
Astatotilapia burtoni 8153 AstBur1_0 miRBase:abu


Quercus robur 38942 Not available PmiREN:Qro Not available
Lottia gigantea 225164 Lotgi1 MirGeneDB:Lgi miRBase:lgi


Amborella trichopoda 13333 AMTR1_0 PmiREN:Atr miRBase:atr


Prunus persica 3760 Prunus_persica_NCBIv2 PmiREN:Ppe miRBase:ppe


Tupaia chinensis 246437 Not available miRBase:tch Not available
Vigna radiata 3916 Vradiata_ver6 Not available


Anopheles albimanus 7167 AalbS2 Not available


Haemonchus contortus 6289 Not available miRBase:hco Not available
Papaver somniferum 3469 ASM357369v1 miRBase:pso

Aegilops tauschii 37682 Not available miRBase:ata Not available
Phalaenopsis aphrodite 212056 Not available PmiREN:Pap Not available
Cynara cardunculus 59895 CcrdV1 Not available

Calidris pugnax 198806 ASM143184v1 Not available


Neogobius melanostomus 47308 RGoby_Basel_V2 Not available


Urocitellus parryii 9999 ASM342692v1 Not available


Gopherus agassizii 38772 ASM289641v1 Not available


Daphnia pulex 6669 V1_0 MirGeneDB:Dpu miRBase:dpu


Silene latifolia 37657 Not available PmiREN:Sla Not available
Solenopsis invicta 13686 Si_gnH Not available


Melitaea cinxia 113334 MelCinx1_0 Not available


Panicum hallii 206008 PHallii_v3_1 PmiREN:Pha
Paeonia lactiflora 35924 Not available miRBase:pla Not available
Anopheles dirus 7168 AdirW1 Not available


Zootermopsis nevadensis 136037 ZooNev1_0 Not available



Myripristis murdjan 586833 fMyrMur1_1 Not available


Arabidopsis thaliana 3702 TAIR10 PmiREN:Ath miRBase:ath



Herpes Simplex Virus 2 10310 Not available miRBase:hsv2 Not available
Mouse gammaherpesvirus 68 33708 Not available miRBase:mghv Not available
Cerebratulus lacteus 6221 Not available miRBase:cla Not available
Delphinapterus leucas 9749 ASM228892v3 Not available


Dendroctonus ponderosae 77166 DendPond_male_1_0 Not available


Drosophila erecta 7220 Not available miRBase:der Not available
Eptesicus fuscus 29078 Not available miRBase:efu Not available
Cimex lectularius 79782 ClecH1 Not available



Helianthus argophyllus 73275 Not available miRBase:har Not available
Glossina pallidipes 7398 GpalI1 Not available


Oreochromis niloticus 8128 O_niloticus_UMD_NMBU miRBase:oni



Stegastes partitus 144197 Stegastes_partitus-1_0_2 Not available


Punica granatum 22663 Not available PmiREN:Pgr Not available
Mesocestoides corti 53468 Not available miRBase:mco Not available
Chara braunii 69332 Cbr_1_0 Not available

Biston betularia 82595 Not available miRBase:bib Not available
Saccoglossus kowalevskii 10224 Not available MirGeneDB:Sko miRBase:sko Not available
Infectious laryngotracheitis virus 10386 Not available miRBase:iltv Not available
Sorghum bicolor 4558 Sorghum_bicolor_NCBIv3 PmiREN:Sbi miRBase:sbi



Jatropha curcas 180498 Not available PmiREN:Jcu Not available
Sesamum indicum 4182 S_indicum_v1_0 Not available

Ricinus communis 3988 Not available PmiREN:Rco miRBase:rco Not available
Nicotiana benthamiana 4100 Not available PmiREN:Nbe Not available
Glossina brevipalpis 37001 GbreI1 Not available



Mnemiopsis leidyi 27923 MneLei_Aug2011 Not available


Fragaria ananassa 3747 Not available PmiREN:Fan Not available
Rattus norvegicus 10116 Rnor_6_0 MirGeneDB:Rno miRBase:rno



Camarhynchus parvulus 87175 STF_HiC Not available


Drosophila virilis 7244 Not available miRBase:dvi Not available
Duck enteritis virus 104388 Not available miRBase:dev Not available
Avicennia marina 82927 Not available miRBase:ama Not available
Lytechinus variegatus 7654 Not available miRBase:lva Not available
Anopheles arabiensis 7173 AaraD1 Not available


Strix occidentalis caurina 311401 Soccid_v01 Not available


Branchiostoma floridae 7739 Not available MirGeneDB:Bfl miRBase:bfl Not available
Helianthus tuberosus 4233 Not available miRBase:htu Not available
Mesocricetus auratus 10036 MesAur1_0 Not available


Pistacia vera 55513 PisVer_v2 Not available

Hevea brasiliensis 3981 Not available PmiREN:Hbr miRBase:hbr Not available
Chondrus crispus 2769 ASM35022v2 Not available


Mouse cytomegalovirus 10366 Not available miRBase:mcmv Not available
Aedes albopictus 7160 AaloF1 Not available


Saccharum spontaneum 62335 Sspon_HiC_chr_asm Not available

Notechis scutatus 8663 TS10Xv2-PRI Not available


Astyanax mexicanus 7994 Astyanax_mexicanus-2_0 Not available


Anabas testudineus 64144 fAnaTes1_2 Not available


Glycine max 3847 Glycine_max_v2_1 PmiREN:Gma miRBase:gma



Fasciola hepatica 6192 Not available miRBase:fhe Not available
Scleropages formosus 113540 fSclFor1_1 Not available


BK polyomavirus 10629 Not available miRBase:bkv Not available
Periophthalmus magnuspinnatus 409849 PM_fa Not available


Melopsittacus undulatus 13146 Melopsittacus_undulatus_6_3 Not available



Tribolium castaneum 7070 Tcas5_2 MirGeneDB:Tca miRBase:tca


Dinoponera quadriceps 609295 Not available miRBase:dqu Not available
Larimichthys crocea 215358 L_crocea_2_0 Not available


Saimiri boliviensis 39432 SaiBol1_0 miRBase:sbo



Anser brachyrhynchus 132585 ASM259213v1 Not available


Belgica antarctica 315563 ASM77530v1 Not available


Manihot esculenta 3983 Manihot_esculenta_v6 PmiREN:Mes miRBase:mes



Cucurbita moschata 3662 Not available PmiREN:Cmo Not available
Echinops telfairi 9371 TENREC MirGeneDB:Ete miRBase:ete



Biomphalaria glabrata 6526 BglaB1 Not available


Arabis alpina 50452 A_alpina_V4 Not available


Populus euphratica 75702 Not available PmiREN:Peu miRBase:peu Not available
Teleopsis dalmanni 139649 Tel_dalmanni_2A_v1_0 Not available


Macaca nemestrina 9545 Mnem_1_0 miRBase:mne


Panagrellus redivivus 6233 Not available miRBase:prd Not available
Brassica oleracea 3712 Not available PmiREN:Bol miRBase:bol Not available
Paramormyrops kingsleyae 1676925 PKINGS_0_1 Not available


Limulus polyphemus 6850 Not available MirGeneDB:Lpo Not available
Salmo salar 8030 ICSASG_v2 miRBase:ssa


Hydra vulgaris 6087 Not available MirGeneDB:Hvu Not available
Sus scrofa 9823 Sscrofa11_1 miRBase:ssc



Daphnia magna 35525 daphmag2_4 MirGeneDB:Dma


Bombyx mori 7091 ASM15162v1 miRBase:bmo



Panthera tigris altaica 74533 PanTig1_0 Not available


Lutzomyia longipalpis 7200 LlonJ1 Not available


Eutrema salsugineum 72664 Eutsalg1_0 PmiREN:Esa

Arabidopsis lyrata 81972 v_1_0 Not available


Triticum aestivum 4565 IWGSC PmiREN:Tae miRBase:tae



Oryza glaberrima 4538 Oryza_glaberrima_V1 PmiREN:Ogl


Citrus reticulata 85571 Not available miRBase:crt Not available
Propithecus coquereli 379532 Pcoq_1_0 Not available


Fragaria vesca 101020 Not available miRBase:fve Not available
Seriola lalandi dorsalis 1841481 Sedor1 Not available


Mus spicilegus 10103 MUSP714 Not available


Rhinopithecus roxellana 61622 Rrox_v1 Not available


Adineta vaga 104782 AMS_PRJEB1171_v1 Not available


Sinocyclocheilus grahami 75366 SAMN03320097_WGS_v1_1 Not available


Anopheles merus 30066 AmerM2 Not available


Drosophila willistoni 7260 Not available miRBase:dwi Not available
Rhodnius prolixus 13249 RproC3 Not available


Leersia perrieri 77586 Lperr_V1_4 Not available


Chenopodium quinoa 63459 ASM168347v1 Not available

Papio anubis 9555 Panu_3_0 Not available



Panax ginseng 4054 Not available miRBase:pgi Not available
Mareks disease virus type 2 36353 Not available miRBase:mdv2 Not available
Plutella xylostella 51655 Not available miRBase:pxy Not available
Monopterus albus 43700 M_albus_1_0 MirGeneDB:Mal


Pongo abelii 9601 PPYG2 Not available



Actinidia chinensis 3625 Not available PmiREN:Ach Not available
Aquila chrysaetos chrysaetos 223781 bAquChr1_2 Not available


Varanus komodoensis 61221 ASM479886v1 Not available


Nasonia longicornis 7427 Not available miRBase:nlo Not available
Acyrthosiphon pisum 7029 Acyr_2_0 miRBase:api



Chinchilla lanigera 34839 ChiLan1_0 Not available


Anopheles gambiae 7165 AgamP4 miRBase:aga



Coturnix japonica 93934 Coturnix_japonica_2_0 Not available


Cervus hanglu yarkandensis 84702 CEY_v1 Not available


Buteo japonicus 224669 ButJap1_0 Not available


Caenorhabditis japonica 281687 C_japonica-7_0_1 Not available



Xiphophorus maculatus 8083 X_maculatus-5_0-male Not available


Xiphophorus couchianus 32473 Xiphophorus_couchianus-4_0_1 Not available


Bubo bubo 30461 BubBub1_0 Not available


Cavia aperea 37548 CavAp1_0 Not available


Castor canadensis 51338 C_can_genome_v1_0 Not available


Solanum lycopersicum 4081 SL3_0 PmiREN:Sly miRBase:sly


Phlebotomus papatasi 29031 PpapI1 Not available


Chrysolophus pictus 9089 Chrysolophus_pictus_GenomeV1_0 Not available


Ginkgo biloba 3311 Not available PmiREN:Gbi Not available
Gorilla gorilla 9593 Not available miRBase:ggo Not available
Catagonus wagneri 51154 CatWag_v2_BIUU_UCD Not available


Bos grunniens 30521 LU_Bosgru_v3_0 Not available


Oryza glumipatula 40148 Oryza_glumaepatula_v1_5 Not available


Lingula anatina 7574 LinAna1_0 MirGeneDB:Lan


Anopheles christyi 43041 AchrA1 Not available


Microcebus murinus 30608 Mmur_3_0 miRBase:mmr



Heliconius melpomene 34740 Hmel1 MirGeneDB:Hme miRBase:hme


Electrophorus electricus 8005 Ee_SOAP_WITH_SSPACE miRBase:eel


Branchiostoma belcheri 7741 Not available miRBase:bbe Not available
Spermophilus dauricus 99837 ASM240643v1 Not available


Bombus terrestris 30195 Bter_1_0 Not available


Zostera marina 29655 Not available PmiREN:Zos Not available
Anopheles minimus 112268 AminM1 Not available


Quercus lobata 97700 ValleyOak3_0 Not available

JC polyomavirus 10632 Not available miRBase:jcv Not available
Mus spretus 10096 SPRET_EiJ_v1 Not available



Pavo cristatus 9049 AIIM_Pcri_1_0 Not available


Brassica napus 3708 AST_PRJEB5043_v1 PmiREN:Bna miRBase:bna



Triticum turgidum 4571 Not available miRBase:ttu Not available
Meleagris gallopavo 9103 Turkey_5_1 Not available



Macaca mulatta 9544 Mmul_10 MirGeneDB:Mml miRBase:mml



Triops cancriformis 194544 Not available miRBase:tcf Not available
Alligator mississippiensis 8496 Not available MirGeneDB:Ami miRBase:ami Not available
Macaca fascicularis 9541 Macaca_fascicularis_6_0 Not available


Pan troglodytes verus polyomavirus 2a 928212 Not available miRBase:ptvpv2a Not available
Equus caballus 9796 EquCab3_0 miRBase:eca



Papio hamadryas 9557 Not available miRBase:pha Not available
Drosophila mojavensis 7230 Not available MirGeneDB:Dmo miRBase:dmo Not available
Glossina palpalis 67801 GpapI1 Not available


Manacus vitellinus 328815 ASM171598v2 Not available


Helianthus annuus 4232 HanXRQr1_0 miRBase:han


Drosophila grimshawi 7222 Not available miRBase:dgr Not available
Glottidia pyramidata 34515 Not available miRBase:gpy Not available
Corvus moneduloides 1196302 UO_Cmon_1_0 Not available


Poecilia mexicana 48701 P_mexicana-1_0 Not available


Nasonia giraulti 7426 Not available miRBase:ngi Not available
Eptatretus burgeri 7764 Eburgeri_3_2 MirGeneDB:Ebu


Helianthus paradoxus 73304 Not available miRBase:hpa Not available
Ananas comosus 4615 F153 Not available

Capsicum annuum 4072 ASM51225v2 PmiREN:Can

Melibe leonina 76178 Not available miRBase:mle Not available
Galdieria sulphuraria 130081 ASM34128v1 Not available


Triticum dicoccoides 85692 WEWSeq_v_1_0 Not available


Triticum spelta 58933 PGSBv2_0 Not available

Drosophila persimilis 7234 Not available miRBase:dpe Not available
Anopheles darlingi 43151 AdarC3 Not available


Poecilia latipinna 48699 P_latipinna-1_0 Not available


Anopheles farauti 69004 AfarF2 Not available


Artibeus jamaicensis 9417 Not available miRBase:aja Not available
Scyliorhinus torazame 75743 Not available MirGeneDB:Sto Not available
Pan troglodytes 9598 Pan_tro_3_0 miRBase:ptr



Pundamilia nyererei 303518 PunNye1_0 miRBase:pny


Apis mellifera 7460 Not available miRBase:ame Not available
Sycon ciliatum 27933 Not available miRBase:sci Not available
Stegodyphus mimosarum 407821 Stegodyphus_mimosarum_v1 Not available


Helobdella robusta 6412 Helro1 Not available


Chelonoidis abingdonii 106734 ASM359739v1 Not available


Gossypium barbadense 3634 Not available PmiREN:Gba Not available
Acacia mangium 224085 Not available miRBase:amg Not available
Physcomitrella patens 3218 Phypa_V3 PmiREN:Ppa miRBase:ppt



Theobroma cacao 3641 Not available miRBase:tcc Not available
Olea europaea 4146 Not available PmiREN:Oeu Not available
Petromyzon marinus 7757 Pmarinus_7_0 MirGeneDB:Pma miRBase:pma



Citrus trifoliata 37690 Not available miRBase:ctr Not available
Jaculus jaculus 51337 JacJac1_0 Not available


Salvia sclarea 38869 Not available miRBase:ssl Not available
Erinaceus europaeus 9365 eriEur1 Not available



Cicer arietinum 3827 Not available PmiREN:Car Not available
Bactrocera dorsalis 27457 Not available miRBase:bdo Not available
Phaseolus vulgaris 3885 PhaVulg1_0 PmiREN:Pvu miRBase:pvu


Gorilla gorilla 9595 gorGor4 Not available



Aiptasia pallida 1720309 Not available miRBase:apa Not available
Loxodonta africana 9785 Loxafr3_0 Not available



Bruguiera cylindrica 106616 Not available miRBase:bcy Not available
Symphalangus syndactylus 9590 Not available miRBase:ssy Not available
Tetraodon nigroviridis 99883 TETRAODON_8_0 MirGeneDB:Tni miRBase:tni



Oryza rufipogon 4529 OR_W1943 PmiREN:Oru


Homo sapiens 9606 GRCh38_p13 MirGeneDB:Hsa miRBase:hsa





Eragrostis tef 110835 ASM97063v1 Not available

Ephydatia muelleri 6052 Not available MirGeneDB:Emu Not available
Salvia miltiorrhiza 226208 Not available miRBase:smi Not available
Culex quinquefasciatus 7176 CpipJ2 miRBase:cqu



Oryzias melastigma 30732 Om_v0_7_RACA Not available


Paralichthys olivaceus 8255 Not available miRBase:pol Not available
Physeter catodon 9755 ASM283717v2 Not available


Ficedula albicollis 59894 FicAlb1_5 Not available


Polistes canadensis 91411 Not available miRBase:pca Not available
Aedes aegypti 7159 Not available MirGeneDB:Aae miRBase:aae Not available
Manduca sexta 7130 Not available miRBase:mse Not available
Lotus japonicus 34305 Not available PmiREN:Lja miRBase:lja Not available
Pogona vitticeps 103695 pvi1_1 Not available


Arabidopsis halleri 81970 Not available PmiREN:Aha Not available
Ostreococcus lucimarinus 436017 ASM9206v1 Not available


Drosophila yakuba 7245 Not available MirGeneDB:Dya miRBase:dya Not available
Ixodes scapularis 6945 IscaW1 MirGeneDB:Isc miRBase:isc


Procavia capensis 9813 proCap1 Not available



Citrus clementina 85681 Citrus_clementina_v1_0 PmiREN:Ccl miRBase:ccl


Citrullus lanatus 3654 Cla97_v1 PmiREN:Cla

Otus sunia 257818 OtuSun1_0 Not available


Simian foamy virus 11642 Not available miRBase:sfv Not available
Macropus eugenii 9315 Meug_1_0 miRBase:meu



Lepeophtheirus salmonis 72036 LSalAtl2s Not available


Brassica oleracea 109376 BOL Not available


Prunus dulcis 3755 ALMONDv2 Not available


Eugenia uniflora 119951 Not available miRBase:eun Not available
Ictidomys tridecemlineatus 43179 SpeTri2_0 Not available



Strigops habroptila 2489341 bStrHab1_v1_p Not available


Bandicoot papillomatosis carcinomatosis virus type 1 479058 Not available miRBase:bpcv1 Not available
Kryptolebias marmoratus 37003 ASM164957v1 Not available


Anopheles melas 34690 AmelC2 Not available


Caenorhabditis elegans 6239 WBcel235 MirGeneDB:Cel miRBase:cel



Aegilops tauschii 200361 Aet_v4_0 Not available


Balaenoptera musculus 9771 mBalMus1_v2 Not available


Echinococcus multilocularis 6211 Not available miRBase:emu Not available
Geospiza fortis 48883 GeoFor_1_0 Not available



Onchocerca volvulus 6282 ASM49940v2 Not available



Oryctolagus cuniculus 9986 OryCun2_0 MirGeneDB:Ocu miRBase:ocu



Chelydra serpentina 8475 Chelydra_serpentina-1_0 Not available


Pisum sativum 3888 Not available PmiREN:Psa Not available
Sphaeramia orbicularis 375764 fSphaOr1_1 Not available


Bos taurus 9913 ARS-UCD1_2 MirGeneDB:Bta miRBase:bta



Laticauda laticaudata 8630 latLat_1_0 Not available


Octopus vulgaris 6645 Not available MirGeneDB:Ovu Not available
Phaeodactylum tricornutum 2850 Not available miRBase:pti Not available
Astatotilapia calliptera 8154 fAstCal1_2 Not available


Pelusios castaneus 367368 Pelusios_castaneus-1_0 Not available


Bovine leukemia virus 11901 Not available miRBase:blv Not available
Malus domestica 3750 ASM211411v1 miRBase:mdm

Cunninghamia lanceolata 28977 Not available miRBase:cln Not available
Oryza meridionalis 40149 Oryza_meridionalis_v1_3 Not available


Tupaia belangeri 37347 tupBel1 Not available


Apteryx owenii 8824 aptOwe1 Not available


Euprymna scolopes 6613 Not available MirGeneDB:Esc Not available
Mus musculus 10090 GRCm39 MirGeneDB:Mmu miRBase:mmu



Microtus ochrogaster 79684 MicOch1_0 Not available


Chrysemys picta 8479 Not available miRBase:cpi Not available
Mandrillus leucophaeus 9568 Mleu_le_1_0 Not available


Brugia pahangi 6280 Not available miRBase:bpa Not available
Sciurus vulgaris 55149 mSciVul1_1 Not available


Saccharum officinarum 4547 Not available miRBase:sof Not available
Carassius auratus 7957 ASM336829v1 miRBase:cau


Rehmannia glutinosa 99300 Not available miRBase:rgl Not available
Ateles geoffroyi 9509 Not available miRBase:age Not available
Lagenaria siceraria 3668 Not available PmiREN:Lsi Not available
Hibiscus syriacus 106335 Not available PmiREN:Hsy Not available
Fundulus heteroclitus 8078 Fundulus_heteroclitus-3_0_2 Not available


Anopheles atroparvus 41427 AatrE3 Not available


Cucumis sativus 3659 ASM407v2 PmiREN:Csa miRBase:cst


Octopus bimaculoides 37653 PRJNA270931 MirGeneDB:Obi


Drosophila ananassae 7217 Not available MirGeneDB:Dan miRBase:dan Not available
Oryza brachyantha 4533 Oryza_brachyantha_v1_4b Not available


Monodelphis domestica 13616 ASM229v1 MirGeneDB:Mdo miRBase:mdo



Salicornia europaea 206448 Not available miRBase:seu Not available
Bruguiera gymnorhiza 39984 Not available miRBase:bgy Not available
Herpesvirus of turkeys 37108 Not available miRBase:hvt Not available
Drosophila melanogaster 7227 BDGP6_32 MirGeneDB:Dme miRBase:dme



Betta splendens 158456 fBetSpl5_2 Not available


Atta cephalotes 12957 Attacep1_0 Not available


Mastacembelus armatus 205130 fMasArm1_2 Not available


Solanum habrochaites 62890 Not available PmiREN:Sha Not available
Lucilia cuprina 7375 ASM118794v1 Not available


Myotis lucifugus 59463 Myoluc2_0 Not available



Peromyscus maniculatus bairdii 230844 HU_Pman_2_1 Not available


Calidris pygmaea 425635 ASM369795v1 Not available


Poecilia formosa 48698 Poecilia_formosa-5_1_2 Not available


Malurus cyaneus samueli 2593467 mCya_1_0 Not available


Haliotis rufescens 6454 Not available miRBase:hru Not available
Gekko japonicus 146911 Not available MirGeneDB:Gja Not available
Drosophila sechellia 7238 Not available miRBase:dse Not available
Daucus carota 79200 ASM162521v1 Not available


Carlito syrichta 1868482 Tarsius_syrichta-2_0_1 Not available



Elaeis guineensis 51953 Not available miRBase:egu Not available
Megaselia scalaris 36166 Msca1 Not available


Schmidtea mediterranea 79327 Not available MirGeneDB:Sme miRBase:sme Not available
Parasteatoda tepidariorum 114398 Not available miRBase:pte Not available
Anopheles stephensi 30069 AsteS1 Not available


Trichoplax adhaerens 10228 ASM15027v1 Not available


Piliocolobus tephrosceles 591936 ASM277652v2 Not available


Gorilla gorilla gorilla polyomavirus 1 928214 Not available miRBase:gggpv1 Not available
Anopheles sinensis 74873 AsinS2 Not available


Dromaius novaehollandiae 8790 droNov1 Not available


Lonchura striata domestica 299123 LonStrDom1 Not available


Cyanistes caeruleus 156563 cyaCae2 Not available


Camelina sativa 90675 Cs miRBase:cas

Selaginella moellendorffii 88036 v1_0 PmiREN:Smo miRBase:smo


Hippocampus comes 109280 H_comes_QL1_v1 Not available


Strongyloides ratti 34506 S_ratti_ED321_v5_0_4 miRBase:str


Cynara cardunculus 4265 Not available miRBase:cca Not available
Pygocentrus nattereri 42514 Pygocentrus_nattereri-1_0_2 Not available


Gopherus evgoodei 1825980 rGopEvg1_v1_p Not available


Pediculus humanus 121224 PhumU2 Not available


Oncorhynchus mykiss 8022 Omyk_1_0 miRBase:omy


Schistosoma japonicum 6182 Not available miRBase:sja Not available
Felis catus 9685 Felis_catus_9_0 Not available



Phytophthora ramorum 164328 Not available miRBase:pra Not available
Triticum turgidum 4567 Svevo_v1 Not available

Trifolium pratense 57577 Trpr Not available


Danio rerio 7955 GRCz11 MirGeneDB:Dre miRBase:dre



Pinus taeda 3352 Not available miRBase:pta Not available
Corchorus capsularis 210143 CCACVL1_1_0 Not available


Ascaris suum 6253 Not available MirGeneDB:Asu miRBase:asu Not available
Erythranthe guttata 4155 Not available PmiREN:Egu Not available
Anolis carolinensis 28377 AnoCar2_0v2 MirGeneDB:Aca miRBase:aca



Salvator merianae 96440 HLtupMer3 Not available


Vitis vinifera 29760 12X PmiREN:Vvi miRBase:vvi



Lates calcarifer 8187 ASB_HGAPassembly_v1 Not available


Gadus morhua 8049 gadMor3_0 MirGeneDB:Gmo miRBase:gmo



Gasterosteus aculeatus 69293 BROAD_S1 Not available



Hofstenia miamia 442651 HmiaM1 Not available


Oryza nivara 4536 Oryza_nivara_v1_0 PmiREN:Oni


Chrysemys picta bellii 8478 Chrysemys_picta_bellii-3_0_3 MirGeneDB:Cpi



Apteryx rowi 308060 aptRow1 Not available


Herpes Simplex Virus 1 10298 Not available miRBase:hsv1 Not available
Saguinus labiatus 78454 Not available miRBase:sla Not available
Epstein Barr virus 10376 Not available miRBase:ebv Not available
Zalophus californianus 9704 mZalCal1_pri Not available


Nomascus leucogenys 61853 Nleu_3_0 miRBase:nle



Setaria italica 4555 Setaria_italica_v2_0 PmiREN:Sit miRBase:sit


Amphimedon queenslandica 400682 Aqu1 MirGeneDB:Aqu miRBase:aqu


Ophiophagus hannah 8665 Not available miRBase:oha Not available
Terebratulina retusa 7580 Not available miRBase:tre Not available
Oryza punctata 4537 Oryza_punctata_v1_2 Not available


Brachypodium distachyon 15368 Brachypodium_distachyon_v3_0 PmiREN:Bdi miRBase:bdi



Dipodomys ordii 10020 Dord_2_0 Not available



Citrus maxima 37334 Not available PmiREN:Cit Not available
Herpes B virus 10325 Not available miRBase:hbv Not available
Latimeria chalumnae 7897 LatCha1 MirGeneDB:Lch



Amphiprion percula 161767 Nemo_v1 Not available


Gossypium raimondii 29730 Graimondii2_0_v6 miRBase:gra


Schistosoma mansoni 6183 ASM23792v2 miRBase:sma


Lactuca sativa 4236 Not available PmiREN:Lsa Not available
Spodoptera frugiperda 7108 Not available miRBase:sfr Not available
Cyprinus carpio 7962 common_carp_genome miRBase:ccr


Phytophthora sojae 67593 Not available miRBase:psj Not available
Bovine herpesvirus 5 35244 Not available miRBase:bhv5 Not available
Eisenia fetida 6396 Not available MirGeneDB:Efe Not available
Bandicoot papillomatosis carcinomatosis virus type 2 500654 Not available miRBase:bpcv2 Not available
Microcaecilia unicolor 1415580 Not available MirGeneDB:Mun Not available
Phoenix dactylifera 42345 Not available PmiREN:Pda Not available
Gossypium herbaceum 34274 Not available miRBase:ghb Not available
Apteryx haastii 8823 aptHaa1 Not available


Oryzias sinensis 183150 ASM858656v1 Not available


Lepidothrix coronata 321398 Lepidothrix_coronata-1_0 Not available


Human cytomegalovirus 10359 Not available miRBase:hcmv Not available
Esox lucius 8010 Eluc_v4 Not available


Oryza sativa 4530 Not available PmiREN:Osa miRBase:osa Not available
Daubentonia madagascariensis 31869 Not available miRBase:dma Not available
Seriola dumerili 41447 Sdu_1_0 Not available


Phocoena sinus 42100 mPhoSin1_pri Not available


Solanum melongena 4111 Not available PmiREN:Sme Not available
Loa loa 7209 Loa_loa_V3 Not available


Leucosolenia complicata 433461 Not available miRBase:lco Not available
Linum usitatissimum 4006 Not available miRBase:lus Not available
Sinocyclocheilus rhinocerous 307959 SAMN03320098_v1_1 Not available


Leptotrombidium deliense 299467 LdelU1 Not available


Vicugna pacos 30538 vicPac1 Not available



Nematostella vectensis 45351 ASM20922v1 MirGeneDB:Nve miRBase:nve


Terrapene carolina triunguis 2587831 T_m_triunguis-2_0 Not available


Marsupenaeus japonicus 27405 Not available miRBase:mja Not available
Thelohanellus kitauei 669202 ASM82789v1 Not available


Salmo trutta 8032 fSalTru1_1 Not available


Volvox carteri 3067 Not available PmiREN:Vca Not available
Clupea harengus 7950 Ch_v2_0_2 Not available


Sarcoptes scabiei 52283 SscaA1 Not available


Oncorhynchus tshawytscha 74940 Otsh_v1_0 Not available


Monodon monoceros 40151 NGI_Narwhal_1 Not available


Merkel cell polyomavirus 493803 Not available miRBase:mcpv Not available
Hordeum vulgare 112509 IBSC_v2 Not available


Ipomoea triloba 35885 ASM357664v1 Not available

Xenopus tropicalis 8364 Xenopus_tropicalis_v9_1 MirGeneDB:Xtr miRBase:xtr



Bos mutus 72004 BosGru_v2_0 Not available


Denticeps clupeoides 299321 fDenClu1_1 Not available


Marmota marmota marmota 9994 marMar2_1 Not available


Hordeum vulgare 4513 Not available miRBase:hvu Not available
Prunus avium 42229 PAV_r1_0 Not available

Cyanidioschyzon merolae 280699 ASM9120v1 Not available

Vigna unguiculata 3917 Not available PmiREN:Vun miRBase:vun Not available
Ciona intestinalis 7719 KH MirGeneDB:Cin miRBase:cin



Hydra magnipapillata 6085 Not available miRBase:hma Not available
Oryzias javanicus 123683 OJAV_1_1 Not available


Chlamydomonas reinhardtii 3055 Chlamydomonas_reinhardtii_v5_5 PmiREN:Cre miRBase:cre


Simian virus 40 10633 Not available miRBase:sv40 Not available
Neolamprologus brichardi 32507 NeoBri1_0 miRBase:nbr


Amphilophus citrinellus 61819 Midas_v5 Not available


Saccharomyces cerevisiae 4932 R64-1-1 Not available



Arabidopsis halleri 63677 Ahal2_2 Not available


Glossina austeni 7395 GausT1 Not available


Vriesea carinata 294102 Not available miRBase:vca Not available
Dasypus novemcinctus 9361 Dasnov3_0 MirGeneDB:Dno miRBase:dno



Fugu rubripes 31033 fTakRub1_2 miRBase:fru



Actinidia chinensis 1590841 Red5_PS1_1_69_0 Not available

Saccharum hybrid 15819 Not available PmiREN:Shy miRBase:ssp Not available
Fragaria vesca 57918 Not available PmiREN:Fve Not available
Accipiter nisus 211598 Accipiter_nisus_ver1_0 Not available


Ailuropoda melanoleuca 9646 ASM200744v2 Not available



Populus trichocarpa 3694 Pop_tri_v3 PmiREN:Ptr miRBase:ptc



Ectocarpus siliculosus 2880 Not available miRBase:esi Not available
Pan paniscus 9597 panpan1_1 miRBase:ppa


Oryzias latipes 8090 ASM223471v1 miRBase:ola



Cottoperca gobio 56716 fCotGob3_1 Not available


Labrus bergylta 56723 BallGen_V1 Not available


Juglans regia 51240 Walnut_2_0 Not available

Echeneis naucrates 173247 fEcheNa1_1 Not available


Canis familiaris 9615 CanFam3_1 MirGeneDB:Cfa miRBase:cfa



Arabidopsis lyrata 59689 Not available PmiREN:Aly miRBase:aly Not available
Aphis gossypii 80765 Not available miRBase:ago Not available
Panicum virgatum 38727 Not available PmiREN:Pvi Not available
Aotus nancymaae 37293 Anan_2_0 Not available


Colobus angolensis palliatus 336983 Cang_pa_1_0 Not available


Anoplophora glabripennis 217634 Agla_1_0 Not available


Cucurbita maxima 3661 Not available PmiREN:Cma Not available
Dioscorea rotundata 55577 TDr96_F1_v2_PseudoChromosome Not available

Prolemur simus 1328070 Prosim_1_0 Not available


Phasianus colchicus 9054 ASM414374v1 Not available


Taeniopygia guttata 59729 bTaeGut1_v1_p MirGeneDB:Tgu miRBase:tgu



Solanum tuberosum 4113 SolTub_3_0 PmiREN:Stu miRBase:stu


Tetranychus urticae 32264 ASM23943v1 miRBase:tur


Nymphaea colorata 210225 ASM883128v1 Not available

Kalanchoe fedtschenkoi 63787 K_fedtschenkoi_M2_v1 Not available

Nannospalax galili 1026970 S_galili_v1_0 Not available


Junco hyemalis 40217 ASM382977v1 Not available


Ochotona princeps 9978 OchPri2_0-Ens Not available



Rhinolophus ferrumequinum 59479 mRhiFer1_v1_p Not available


Numida meleagris 8996 NumMel1_0 Not available


Bubalus bubalis 89462 Not available miRBase:bbu Not available
Scophthalmus maximus 52904 ASM1334776v1 Not available


Caenorhabditis brenneri 135651 C_brenneri-6_0_1b miRBase:cbn



Brassica nigra 3710 Not available PmiREN:Bni Not available
Torque teno virus 68887 Not available miRBase:ttv Not available
Crassostrea gigas 29159 oyster_v9 MirGeneDB:Cgi


Oryza barthii 65489 O_barthii_v1 Not available


Brugia malayi 6279 Bmal-4_0 miRBase:bma



Crocodylus porosus 8502 CroPor_comp1 Not available


Anas platyrhynchos 8839 ASM874695v1 miRBase:apl


Octodon degus 10160 OctDeg1_0 Not available


Ursus maritimus 29073 UrsMar_1_0 Not available


Vombatus ursinus 29139 bare-nosed_wombat_genome_assembly Not available


Xenopus laevis 8355 Not available MirGeneDB:Xla miRBase:xla Not available
Helianthus ciliaris 73280 Not available miRBase:hci Not available
Otolemur garnettii 30611 OtoGar3 miRBase:oga



Locusta migratoria 7004 Not available miRBase:lmi Not available
Pteropus vampyrus 132908 pteVam1 Not available


Sander lucioperca 283035 SLUC_FBN_1 Not available


Panthera pardus 9691 PanPar1_0 Not available


Sparus aurata 8175 fSpaAur1_1 Not available


Dicentrarchus labrax 13489 seabass_V1_0 Not available


Canis lupus dingo 286419 ASM325472v1 Not available


Cyclopterus lumpus 8103 fCycLum1_pri Not available


Ptychodera flava 63121 Not available MirGeneDB:Pfl Not available
Gallus gallus 9031 GRCg6a MirGeneDB:Gga miRBase:gga



Gambusia affinis 33528 ASM309773v1 Not available


Bovine herpesvirus 1 10320 Not available miRBase:bhv1 Not available
Cynoglossus semilaevis 244447 Cse_v1_0 Not available


Coffea canephora 49390 AUK_PRJEB4211_v1 Not available

Human immunodeficiency virus 1 11676 Not available miRBase:hiv1 Not available
Parus major 9157 Parus_major1_1 Not available


Serinus canaria 9135 SCA1 Not available


Meriones unguiculatus 10047 MunDraft-v1_0 Not available


Lepisosteus oculatus 7918 LepOcu1 MirGeneDB:Loc


Acanthochromis polyacanthus 80966 ASM210954v1 Not available


Python bivittatus 176946 Not available MirGeneDB:Pbv miRBase:pbv Not available
Chlorocebus sabaeus 60711 ChlSab1_1 Not available



Capitella teleta 283909 Capitella_teleta_v1_0 MirGeneDB:Cte miRBase:cte


Salarias fasciatus 181472 fSalaFa1_1 Not available


Cannabis sativa female 3483 cs10 Not available
Pelodiscus sinensis 13735 PelSin_1_0 Not available


Lynx canadensis 61383 mLynCan4_v1_p Not available


Solanum pennellii 28526 Not available PmiREN:Spe Not available
Kaposi sarcoma-associated herpesvirus 37296 Not available miRBase:kshv Not available
Columba livia 8932 Not available MirGeneDB:Cli miRBase:cli Not available
Struthio camelus australis 441894 ASM69896v1 Not available


Sinocyclocheilus anshuiensis 1608454 SAMN03320099_WGS_v1_1 Not available


Fraxinus excelsior 38873 Not available PmiREN:Fex Not available
Vigna angularis 3914 Vigan1_1 Not available


Camelus dromedarius 9838 CamDro2 Not available


Carica papaya 3649 Not available PmiREN:Cpa miRBase:cpa Not available
Anser cygnoides 8845 GooseV1_0 Not available


Parambassis ranga 210632 fParRan2_1 Not available


Anopheles funestus 62324 AfunF3 Not available


Oncorhynchus kisutch 8019 Okis_V2 Not available


Anopheles coluzzii 1518534 AcolM1 Not available


Capsella rubella 81985 Not available PmiREN:Cru Not available
Aquilegia caerulea 218851 Not available miRBase:aqc Not available
Brassica rapa 3711 Brapa_1_0 PmiREN:Bra miRBase:bra


Ictalurus punctatus 7998 IpCoco_1_2 miRBase:ipu


Phascolarctos cinereus 38626 phaCin_unsw_v4_1 Not available


Leptobrachium leishanense 445787 ASM966780v1 Not available


Callithrix jacchus 9483 ASM275486v1 miRBase:cja



Brassica juncea 3707 Not available PmiREN:Bju Not available
Callorhinchus milii 7868 Callorhinchus_milii-6_1_3 MirGeneDB:Cmi miRBase:cmi



Cucumis melo 3656 Melonv4 PmiREN:Cme miRBase:cme

Podarcis muralis 64176 PodMur_1_0 Not available


Lemur catta 9447 Not available miRBase:lca Not available
Erpetoichthys calabaricus 27687 fErpCal1_1 Not available


Brachionus plicatilis 10195 Not available MirGeneDB:Bpl Not available
Amazona collaria 241587 ASM394721v1 Not available


Bison bison bison 43346 Bison_UMD1_0 Not available


Ursus americanus 9643 ASM334442v1 Not available


Fagus sylvatica 28930 Not available PmiREN:Fsy Not available
Capra hircus 9925 ARS1 miRBase:chi


Triticum urartu 4572 ASM34745v1 Not available


Heligmosomoides polygyrus 6339 Not available miRBase:hpo Not available
Pongo pygmaeus 9600 Not available miRBase:ppy Not available
Hucho hucho 62062 ASM331708v1 Not available


Tursiops truncatus 9739 turTru1 Not available



Cercocebus atys 9531 Caty_1_0 Not available


Branchiostoma lanceolatum 7740 Not available MirGeneDB:Bla Not available
Rhesus lymphocryptovirus 45455 Not available miRBase:rlcv Not available
Rhesus monkey rhadinovirus 703611 Not available miRBase:rrv Not available
Caenorhabditis remanei 31234 C_remanei-15_0_1 miRBase:crm



Cyprinodon variegatus 28743 C_variegatus-1_0 Not available


Digitalis purpurea 4164 Not available miRBase:dpr Not available
Symbiodinium microadriaticum 2951 Not available miRBase:smc Not available
Sphenodon punctatus 8508 ASM311381v1 MirGeneDB:Spt


Hippoglossus hippoglossus 8267 Not available miRBase:hhi Not available
Vulpes vulpes 9627 VulVul2_2 Not available


Nothoprocta perdicaria 30464 notPer1 Not available


Stomoxys calcitrans 35570 ScalU1 Not available


Festuca arundinacea 4606 Not available miRBase:far Not available
Anopheles epiroticus 199890 AepiE1 Not available


Caenorhabditis briggsae 6238 CB4 MirGeneDB:Cbr miRBase:cbr



Nicotiana attenuata 49451 NIATTr2 Not available


Theropithecus gelada 9565 Tgel_1_0 Not available


Musa acuminata 4641 Not available PmiREN:Mac Not available
Drosophila simulans 7240 Not available MirGeneDB:Dsi miRBase:dsi Not available
Dictyostelium discoideum 44689 Not available miRBase:ddi Not available
Spirodela polyrhiza 29656 Not available PmiREN:Spo Not available
Equus asinus asinus 83772 ASM303372v1 Not available


Echinococcus granulosus 6210 Not available miRBase:egr Not available
Medicago truncatula 3880 MedtrA17_4_0 PmiREN:Mtr miRBase:mtr



Oreochromis aureus 47969 ASM587006v1 Not available


Anopheles culicifacies 139723 AculA1 Not available


Ciona savignyi 51511 CSAV_2_0 miRBase:csa


Lupinus angustifolius 3871 LupAngTanjil_v1_0 Not available


Cebus capucinus 2715852 Cebus_imitator-1_0 Not available


Anopheles maculatus 74869 AmacM1 Not available


Gossypium arboreum 29729 Not available PmiREN:Gar miRBase:gar Not available
Anopheles quadriannulatus 34691 AquaS1 Not available


Oikopleura dioica 34765 Not available miRBase:odi Not available
Solanum pimpinellifolium 4084 Not available PmiREN:Spi Not available
Anas platyrhynchos platyrhynchos 8840 CAU_duck1_0 Not available


Citrus sinensis 2711 Not available PmiREN:Csi miRBase:csi Not available
Nautilus pompilius 34573 Not available MirGeneDB:Npo Not available
Rosa chinensis 74649 RchiOBHm-V2 Not available


Nothobranchius furzeri 105023 Nfu_20140520 miRBase:nfu



Glycine soja 3848 Not available miRBase:gso Not available
Amphiprion ocellaris 80972 AmpOce1_0 Not available


Sarcophilus harrisii 9305 mSarHar1_11 MirGeneDB:Sha miRBase:sha



Pygathrix bieti 61621 ASM169854v1 miRBase:pbi


Mareks disease virus type 1 10390 Not available miRBase:mdv1 Not available
Choloepus hoffmanni 9358 choHof1 Not available



Ornithorhynchus anatinus 9258 mOrnAna1_p_v1 MirGeneDB:Oan miRBase:oan



Pristionchus pacificus 54126 Not available miRBase:ppc Not available
Anas zonorhyncha 75864 ASM222487v1 Not available


Setaria viridis 4556 Setaria_viridis_v2_0 Not available