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                     ---- Mapping parameters and Annotations ---- 
Number of allowed mismatches: 2 (mm=2)
Alignment type: seed alignment (alignType=n)
Length of the seed: 20 (seed=20)

Used genome assembly bowtie1 index: GRCh38_p10_mp:NC_007605
 ---- ANNOTATIONS ---- 
Used miRNAs reference species from miRBase v22
Used miRNAs for species: hsa:ebv
Used ncRNA annotations: 
   libs=GRCh38_p10_genomic_tRNA (Genomic tRNA database)
   libs=hsa_yRNA (yRNAs)
   libs=vRNA (vault RNAs)
   libs=GRCh38_p10_ncRNA (Ensembl release 91 (ncRNA))
   libs=GRCh38_p10_cdna (Ensembl release 91 (cDNA))
   libs=GRCh38_p10_RNAcentral (RNAcentral database 7.0)

 ---- Preprocessing and adapter trimming parameters: ---- 
Unknown protocol: Illumina

 ---No quality filtering was used (only reads with ambigous bases are filtered out- ---

                        


                    Number of Raw input reads      : 6203008
Number of adapter trimmed reads: 6114811 (98.57815756484595)
--- Number of filtered reads ---- 
   Quality Filtered Reads     : 18872 
   Reads below min read count : 309386 
   Reads above max. length    : 0 
   Reads below min. length    : 1457621 
   Percentage of AdapterDimer : 3.4880611813859517 

 Reads in analysis: 4328932 (69.7876256164751)

                        

Profiling results by rna type.



Genome/Library mapping results

Genome mapped reads:
3828834(88.45%)
Unique Genome mapped reads:
81680(90.52%)

Graphical Summary

MiR profiling results

Detected hairpin miR:
394 (20.29%)
Reads mapped to miRBase hairpins:
2390 (0.07%)
Detected mature miR:
567 (21.0%)
Reads mapped to miRNAs:
788887 (21.83%)

Download profiling results

isomiR profile:
Download
isomiR annotation:
Download
miRNA profile (Multiple Assignment):
Download
miRNA profile (Single Assignment):
Download
MicroRNA details:
isomiR details:

yRNAs

Mapped reads in sense direction:
1473394(40.78%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
2(0.0%)
MA antisense
SA antisense

Ensembl release 91 (ncRNA)

Mapped reads in sense direction:
307527(8.51%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
143712(3.98%)
MA antisense
SA antisense

RNAcentral database 7.0

Mapped reads in sense direction:
466482(12.91%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
4318(0.12%)
MA antisense
SA antisense

Genomic tRNA database

Mapped reads in sense direction:
225460(6.24%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
599(0.02%)
MA antisense
SA antisense

vault RNAs

Mapped reads in sense direction:
7664(0.21%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
6(0.0%)
MA antisense
SA antisense

Ensembl release 91 (cDNA)

Mapped reads in sense direction:
103094(2.85%)
multiple assignment (MA)
single assignment (SA)
Mapped reads in antisense direction:
89410(2.47%)
MA antisense
SA antisense
tRNA genes:
details