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miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
Filter the database to select the samples
Name Exp Study TaxonID SampleTag SampleTag2 LibraryInf Disease Method
Austrofundulus limnaeus SRX2562340 SRP058458 52670 Whole Embryo tissue: Whole Embryo Illumina NA NA
Caenorhabditis elegans SRX2826552 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-2(ok304) II; alg-2::HA::alg-2 IV Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Arabidopsis thaliana SRX8554598 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Caenorhabditis elegans SRX2826551 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-1::HA::alg-1 IV; alg-1(gk214) X Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Arabidopsis thaliana SRX8554597 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Caenorhabditis elegans SRX2826550 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: N2 Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Arabidopsis thaliana SRX8554596 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Arabidopsis thaliana SRX8554595 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Caenorhabditis elegans SRX2826556 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-1::HA::alg-2 IV; alg-1(gk214) X Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Caenorhabditis elegans SRX2826555 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-2(ok304) II; alg-2::HA::alg-2 IV Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Caenorhabditis elegans SRX2826554 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-1::HA::alg-1 IV; alg-1(gk214) X Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Arabidopsis thaliana SRX8554589 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Caenorhabditis elegans SRX2826553 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-1::HA::alg-2 IV; alg-1(gk214) X Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels
Arabidopsis thaliana SRX8554588 SRP267491 3702 rosette leaves molecule subtype: Small RNA other NA NA
Caenorhabditis elegans SRX2826559 SRP107241 6239 Whole worm cell lysate, Gravid Adult genotype: alg-2(ok304) II Illumina NA extract_protocol: Small RNAs (18-28-nt) were purified from total RNA by size selection using 17% polyacrylamide gels and treated with RNA polyphosphatase or Tobacco Alkaline Phosphatase to facilitate capture of 22G-RNAs, followed by ligation of preadenylated 3’ adapters and non-adenylated 5’ adapters. Adapter-ligated small RNAs were size selected at each ligation step from 12-15% polyacrylamide gels. Adapter-bound small RNAs were reverse transcribed and then amplified using PCR. PCR products (~136-146 bp) were size selected from 10% polyacrylamide gels