| Species | TaxonID | Studies | Samples | Genus | Family | Order | Class | Phylum |
|---|---|---|---|---|---|---|---|---|
| Treponema denticola | 158 | 1 | 1 | Treponema | Treponemataceae | Spirochaetales | Spirochaetia | Spirochaetota |
| Helicobacter pylori | 210 | 2 | 2 | Helicobacter | Helicobacteraceae | Campylobacterales | Epsilonproteobacteria | Campylobacterota |
| Thermus thermophilus | 274 | 1 | 2 | Thermus | Thermaceae | Thermales | Deinococci | Deinococcota |
| Pseudomonas aeruginosa | 287 | 1 | 3 | Pseudomonas | Pseudomonadaceae | Pseudomonadales | Gammaproteobacteria | Pseudomonadota |
| Pseudomonas fluorescens | 294 | 1 | 3 | Pseudomonas | Pseudomonadaceae | Pseudomonadales | Gammaproteobacteria | Pseudomonadota |
| Sinorhizobium meliloti | 382 | 1 | 4 | Sinorhizobium | Rhizobiaceae | Hyphomicrobiales | Alphaproteobacteria | Pseudomonadota |
| Legionella pneumophila | 446 | 2 | 3 | Legionella | Legionellaceae | Legionellales | Gammaproteobacteria | Pseudomonadota |
| Acinetobacter baumannii | 470 | 1 | 12 | Acinetobacter | Moraxellaceae | Moraxellales | Gammaproteobacteria | Pseudomonadota |
| Neisseria gonorrhoeae | 485 | 1 | 2 | Neisseria | Neisseriaceae | Neisseriales | Betaproteobacteria | Pseudomonadota |
| Erwinia amylovora | 552 | 1 | 3 | Erwinia | Erwiniaceae | Enterobacterales | Gammaproteobacteria | Pseudomonadota |
| Escherichia coli | 562 | 8 | 13 | Escherichia | Enterobacteriaceae | Enterobacterales | Gammaproteobacteria | Pseudomonadota |
| Escherichia fergusonii | 564 | 1 | 1 | Escherichia | Enterobacteriaceae | Enterobacterales | Gammaproteobacteria | Pseudomonadota |
| Klebsiella pneumoniae | 573 | 1 | 2 | Klebsiella | Enterobacteriaceae | Enterobacterales | Gammaproteobacteria | Pseudomonadota |
| Yersinia pestis | 632 | 1 | 1 | Yersinia | Yersiniaceae | Enterobacterales | Gammaproteobacteria | Pseudomonadota |
| Vibrio cholerae | 666 | 1 | 1 | Vibrio | Vibrionaceae | Vibrionales | Gammaproteobacteria | Pseudomonadota |