alignment to pre-microRNA

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GGGCAGTCTTTGCTACTGTAAACATCCTTGACTGGAAGCTGTAAGGTGTTCAGAGGAGCTTTCAGTCGGATGTTTACAGCGGCAGGCTGCCA  11,221(2,950.8/14,237.6) adj:11,215.5
.((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).
TGTAAACATCCTTGACTGGAAGCT 7,879(2,071.9/9,997.2) adj:7,879 + lv3p|lv3pE|lv3p#2
GTAAACATCCTTGACTGGAAGCT 459(120.7/582.4) adj:459 + mv
TGTAACCATCCTTGACTGGAAGCT 430(113.1/545.6) adj:430 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGAAGC 370(97.3/469.5) adj:370 + lv3p|lv3pE|lv3p#1
CTTTCAGTCGGATGTTTACAGC 354(93.1/449.2) adj:354 + exact
TGTAAACATCCTTGACTGGAAGCTT 310(81.5/393.3) adj:310 + nta#T|nta#T#1
TGTAAACATCCTTGACTGGAAGCG 265(69.7/336.2) adj:265 + nta#G|nta#G#1
TGTAAACATCCTTGACTGGAA 101(26.6/128.2) adj:101 + lv3p|lv3pT|lv3p#-1
TGTAAACATCCTTGACTGGAAG 100(26.3/126.9) adj:100 + exact
TAAACATCCTTGACTGGAAGCT 85(22.4/107.9) adj:85 + mv
TGTAAACATCCTTGAC 73(19.2/92.6) adj:73 + lv3p|lv3pT|lv3p#-6
CTTTCAGTCGGATGTTTACAGT 60(15.8/76.1) adj:60 + nta#T|nta#T#1
CTTTCAGTCGGATGTTTACAGTT 53(13.9/67.2) adj:53 + nta#T|nta#T#2
TGTAAACATCCTTGACTGGAAGCC 50(13.1/63.4) adj:50 + nta#C|nta#C#1
TGTAAACATCCTTGACTGGAAGCA 41(10.8/52) adj:41 + nta#A|nta#A#1
TGTAAACATCCTTGACTGGA 41(10.8/52) adj:41 + lv3p|lv3pT|lv3p#-2
GTAAACATCCTTGACTGGAAGCTT 30(7.9/38.1) adj:30 + nta#T|nta#T#1
TGTAACCATCCTTGACTGGAAGCTT 26(6.8/33) adj:26 + nta#T|nta#T#1
TGTAAACATCCTTGACTGG 26(6.8/33) adj:26 + lv3p|lv3pT|lv3p#-3
CTTTCAGTCGGATGTTTACAG 25(6.6/31.7) adj:25 + lv3p|lv3pT|lv3p#-1
CTTTCCGTCGGATGTTTACAGC 22(5.8/27.9) adj:22 + exactNucVar|5:A>C
CTTTCAGTCGGATGTTTACA 22(5.8/27.9) adj:22 + lv3p|lv3pT|lv3p#-2
TGTAACCATCCTTGACTGGAAGC 21(5.5/26.6) adj:21 + lv3p|lv3pE|lv3p#1
TGTAAACATCCTTGACTGGAAGA 20(5.3/25.4) adj:20 + nta#A|nta#A#1
CTTTCAGTCGGATGTTTAC 20(5.3/25.4) adj:20 + lv3p|lv3pT|lv3p#-3
CTTTCAGTCGGATGTTTACAGCT 14(3.7/17.8) adj:14 + nta#T|nta#T#1
GTAAACATCCTTGACTGGAAGCG 12(3.2/15.2) adj:12 + nta#G|nta#G#1
TGTAACCATCCTTGACTGGAAGCG 11(2.9/14) adj:11 + nta#G|nta#G#1
GTAAAAATCCTTGACTGGAAGCT 11(2.9/14) adj:11 + mv
TTTCAGTCGGATGTTTACAGC 11(2.9/14) adj:11 + lv5p|lv5pT|lv5p#-1
TGTAAACATCCTTGACTGGAAGCTA 8(2.1/10.2) adj:8 + nta#A|nta#A#1
TGTAAACATCCTTGACTGGAAA 8(2.1/10.2) adj:8 + nta#A|nta#A#1
TGTAAACATCCTTGGCTGGAAGCT 7(1.8/8.9) adj:7 + lv3p|lv3pE|lv3p#2
TGTAACCATCCTTGACTGGA 7(1.8/8.9) adj:7 + lv3p|lv3pT|lv3p#-2
TGTAAACATCCTTGACTGGAAGT 7(1.8/8.9) adj:7 + nta#T|nta#T#1
CTTTCAGTCGGATGTTTACAGCA 7(1.8/8.9) adj:7 + nta#A|nta#A#1
TGTAAACATCCTTGACTGGAAGAT 6(1.6/7.6) adj:6 + mlv3p|mlv3p#2
TGTAAACATCCTTGACTGGAAGCTG 6(1.6/7.6) adj:6 + lv3p|lv3pE|lv3p#3
TGTAAACATCCTTGACTG 6(1.6/7.6) adj:6 + lv3p|lv3pT|lv3p#-4
TGTAACCATCCTTGACTGGAAG 6(1.6/7.6) adj:6 + exactNucVar|5:A>C
GTAAACATCCTTGACTGGAAGC 6(1.6/7.6) adj:6 + mv
GTAAACATCCTTGACTGGAAGCTGT 6(1.6/7.6) adj:6 + mv
ACATCCTTGACTGGAAGCT 6(1.6/7.6) adj:6 + mv
CTTTCAGTCGGATGTT 6(1.6/7.6) adj:3 + lv3p|lv3pT|lv3p#-6
TTTCAGTCGGATGTTTACAGCT 6(1.6/7.6) adj:6 + nta#T|nta#T#1
TGTAAACATCCTTGACTGGAAGCTGT 5(1.3/6.3) adj:5 + lv3p|lv3pE|lv3p#4
CGTAAACATCCTTGACTGGAAGCT 5(1.3/6.3) adj:5 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGAAGCCT 5(1.3/6.3) adj:5 + nta#T|nta#T#1
TGTAAACATCCTTGACT 5(1.3/6.3) adj:5 + lv3p|lv3pT|lv3p#-5
TGTAAACATCCTTGACGGGAAGCT 5(1.3/6.3) adj:5 + lv3p|lv3pE|lv3p#2
TGCAAACATCCTTGACTGGAAGCT 5(1.3/6.3) adj:5 + lv3p|lv3pE|lv3p#2
TGTAAACATCTTTGACTGGAAGCT 5(1.3/6.3) adj:5 + lv3p|lv3pE|lv3p#2
TGTAACCATCCTTGACTGGAAGCC 5(1.3/6.3) adj:5 + nta#C|nta#C#1
GTAAACATCCTTGACTGGAAGCTG 5(1.3/6.3) adj:5 + mv
TCCTTGACTGGAAGCT 5(1.3/6.3) adj:5 + mv
TGTGAACATCCTTGACTGGAAGCT 4(1.1/5.1) adj:4 + lv3p|lv3pE|lv3p#2
TATAAACATCCTTGACTGGAAGCT 4(1.1/5.1) adj:4 + lv3p|lv3pE|lv3p#2
TGTAAACATTCTTGACTGGAAGCT 4(1.1/5.1) adj:4 + lv3p|lv3pE|lv3p#2
GTAAACATCCTTGACTGGAAGCA 4(1.1/5.1) adj:4 + nta#A|nta#A#1
TAAACATCCTTGACTGGAAGCG 4(1.1/5.1) adj:4 + nta#G|nta#G#1
CTTTCCGTCGGATGTTTACA 4(1.1/5.1) adj:4 + lv3p|lv3pT|lv3p#-2
CTTTCAGTCGGATGTTTACAGA 4(1.1/5.1) adj:4 + nta#A|nta#A#1
CTTTCAGTCGGATGTTTACAGCC 4(1.1/5.1) adj:4 + nta#C|nta#C#1
CTGTAAACATCCTTGACTGGAAGCT 3(0.8/3.8) adj:3 + mv
TGTAAACATCCTTGACTGGAAGCTTT 3(0.8/3.8) adj:3 + nta#T|nta#T#2
TGTAACCATCCTTGACTGGAA 3(0.8/3.8) adj:3 + lv3p|lv3pT|lv3p#-1
TGTAGACATCCTTGACTGGAAGCT 3(0.8/3.8) adj:3 + lv3p|lv3pE|lv3p#2
TGTAAACATCCCTGACTGGAAGCT 3(0.8/3.8) adj:1.5 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGATTGGAAGCT 3(0.8/3.8) adj:3 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGAGGCT 3(0.8/3.8) adj:3 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACAGGAAGCT 3(0.8/3.8) adj:3 + lv3p|lv3pE|lv3p#2
GTAAACATCCTTGACTGGAAGCC 3(0.8/3.8) adj:3 + nta#C|nta#C#1
TAAACATCCTTGACTGGAAGCTT 3(0.8/3.8) adj:3 + nta#T|nta#T#1
CTTTCAGTCGGATGTTTACAGTA 3(0.8/3.8) adj:3 + nta#A|nta#A#1
TGTAAACATCCTGGACTGGAAGCT 2(0.5/2.5) adj:1 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGAAGTT 2(0.5/2.5) adj:2 + nta#T|nta#T#2
TGTAAAAATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCATGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAGCATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAATCATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGAAGCTTTAT 2(0.5/2.5) adj:2 + .
TGTAAACATCCTTGACTGGCAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTAACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACGTCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGTAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTAGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
AGTAAACATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAACCATCCTTGACTGG 2(0.5/2.5) adj:2 + lv3p|lv3pT|lv3p#-3
TCTAAACATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGAAAACATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACATCCTTGACTGGGAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
TGTAAACAACCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + lv3p|lv3pE|lv3p#2
GTAAACATCCTTGACTGGAAGCTGTAAGGTG 2(0.5/2.5) adj:2 + .
GTAAACATCCTTGACTGGAAGCTA 2(0.5/2.5) adj:2 + nta#A|nta#A#1
GTAAACATCCTTGACTGGAAG 2(0.5/2.5) adj:2 + lv5p|lv5pT|lv5p#-1
TAAACCTCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + mv
TAAACATCCTTGACT 2(0.5/2.5) adj:2 + mv
TAAACATCCTTGACTGGAAGCTGT 2(0.5/2.5) adj:2 + mv
CATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + mv
ATCCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + mv
CCTTGACTGGAAGCT 2(0.5/2.5) adj:2 + mv
GCTTTCAGTCGGATGTTTACAGC 2(0.5/2.5) adj:2 + lv5p|lv5pE|lv5p#1
CTTTCCGTCGGATGTTTACAG 2(0.5/2.5) adj:2 + lv3p|lv3pT|lv3p#-1
CTTTCCGTCGGATGTTTACAGT 2(0.5/2.5) adj:2 + nta#T|nta#T#1
CTTTCAGTCGGATGTTTACAGAT 2(0.5/2.5) adj:2 + nta#T|nta#T#1
TTTCAGTCGGATGTTTACAGT 2(0.5/2.5) adj:2 + nta#T|nta#T#1
TTTCAGTCGGATGTTTACAGTT 2(0.5/2.5) adj:2 + nta#T|nta#T#2