alignment to pre-microRNA

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TTGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCA  4,330(1,138.7/5,494.1) adj:1,916.5
..((.(((((((((.((.(((((((((((.(((.(.(.....).))))))))))))))).)))))..)))))).))..
AGCAGCATTGTACAGGGCTATGA 1,391(365.8/1,765) adj:695.5 + exact
AGCAGCATTGTACAGGGCTATG 683(179.6/866.6) adj:341.5 + lv3p|lv3pT|lv3p#-1
AGCAGCATTGTACAGGGCTAT 527(138.6/668.7) adj:175.7 + lv3p|lv3pT|lv3p#-2
AGCAGCATTGTACAGGGCTATGT 502(132/637) adj:251 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCT 473(124.4/600.2) adj:157.7 + lv3p|lv3pT|lv3p#-4
AGCAGCATTGTACAGGGCTA 136(35.8/172.6) adj:45.3 + lv3p|lv3pT|lv3p#-3
AGCAGCATTGTACAGGGC 119(31.3/151) adj:39.7 + lv3p|lv3pT|lv3p#-5
AGCAGCATTGTACAGGGCTATGAT 77(20.2/97.7) adj:38.5 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTATT 75(19.7/95.2) adj:25 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTATGTT 58(15.3/73.6) adj:29 + nta#T|nta#T#2
AGCAGCATTGTACAGGGCTATA 46(12.1/58.4) adj:15.3 + nta#A|nta#A#1
AGCAGCATTGTACAGGGCG 30(7.9/38.1) adj:10 + nta#G|nta#G#1
AGCAGCATTGTACAGGGCTATAA 25(6.6/31.7) adj:8.3 + nta#A|nta#A#2
AGCAGCATTGTACAGGGCTATGAA 24(6.3/30.5) adj:12 + lv3p|lv3pE|lv3p#1
CAGCATTGTACAGGGCTATGA 18(4.7/22.8) adj:9 + lv5p|lv5pT|lv5p#-2
AGCAGCATTGTACAGGGCTATGG 16(4.2/20.3) adj:8 + nta#G|nta#G#1
AGCAGCATTGTACAGGGCTT 11(2.9/14) adj:3.7 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTAA 11(2.9/14) adj:3.7 + nta#A|nta#A#1
AGCAGCATTGTACAGGGCTATGTA 10(2.6/12.7) adj:5 + lv3p|lv3pE|lv3p#1
AGCAGAATTGTACAGGGCT 7(1.8/8.9) adj:2.3 + lv3p|lv3pT|lv3p#-4
AGCAGCATTGTACAGGGCTATGAG 7(1.8/8.9) adj:3.5 + nta#G|nta#G#1
AGCAGCATTGTACAGGGCC 6(1.6/7.6) adj:2 + nta#C|nta#C#1
AGCAGCATTGTACAGGGCTAAA 6(1.6/7.6) adj:2 + nta#A|nta#A#2
AGCAGCATTGTACAGGGCTATGC 6(1.6/7.6) adj:3 + nta#C|nta#C#1
AGCAGCATTGTACAGGGCTAAT 5(1.3/6.3) adj:1.7 + nta#T|nta#T#1
AGCAGAATTGTACAGGGCTAT 4(1.1/5.1) adj:1.3 + lv3p|lv3pT|lv3p#-2
AGCAGCATTGTACAGGGCA 4(1.1/5.1) adj:1.3 + nta#A|nta#A#1
AGCAGAATTGTACAGGGCTATGA 4(1.1/5.1) adj:2 + exactNucVar|5:C>A
AGCAGAATTGTACAGGGCTATGT 3(0.8/3.8) adj:1.5 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTATGAGT 3(0.8/3.8) adj:1.5 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTATGAAA 3(0.8/3.8) adj:3 + lv3p|lv3pE|lv3p#2
AGCAGCATTGTACAGGGCTTT 3(0.8/3.8) adj:1 + nta#T|nta#T#2
AGCAGCATTGTACAGGGATAT 3(0.8/3.8) adj:1 + lv3p|lv3pT|lv3p#-2
GCAGCATTGTACAGGGCTATGA 3(0.8/3.8) adj:1.5 + lv5p|lv5pT|lv5p#-1
CAGCATTGTACAGGGCT 3(0.8/3.8) adj:1 + mv
AGCAGCATTGTACAGGGCTG 2(0.5/2.5) adj:0.7 + nta#G|nta#G#1
AGCAGCATTGTACAGGACTATGA 2(0.5/2.5) adj:1 + exactNucVar|16:G>A
AGAAGCATTGTACAGGGCTATGT 2(0.5/2.5) adj:1 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTATGATA 2(0.5/2.5) adj:2 + mlv3p|mlv3p#2
AGCAGCATTGTACAGGGCTATGAAT 2(0.5/2.5) adj:1 + nta#T|nta#T#1
AGCAGCATTGTACAGGGCTAC 2(0.5/2.5) adj:0.7 + nta#C|nta#C#1
AGCAGCATTGTACAGGGCTAAG 2(0.5/2.5) adj:1 + lv3p|lv3pT|lv3p#-1
GCAGCATTGTACAGGGCTATG 2(0.5/2.5) adj:1 + mv
GCAGCATTGTACAGGGCT 2(0.5/2.5) adj:0.7 + mv
CAGCATTGTACAGGGCTATGAT 2(0.5/2.5) adj:1 + nta#T|nta#T#1
CAGCATTGTACAGGGCTAT 2(0.5/2.5) adj:0.7 + mv
CAGCATTGTACAGGGCTA 2(0.5/2.5) adj:0.7 + mv
AGCATTGTACAGGGCTATGA 2(0.5/2.5) adj:1 + lv5p|lv5pT|lv5p#-3
AGCATTGTACAGGGCTAT 2(0.5/2.5) adj:0.7 + mv