alignment to pre-microRNA

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GGGTGAGGTAGTAGGTTGTATAGTTTGGGGCTCTGCCCTGCTATGGGATAACTATACAATCTACTGTCTTTCCT  6,581(1,730.6/8,350.2) adj:2,187.8
(((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))).)))
TGAGGTAGTAGGTTGTATAGTT 4,084(1,074/5,181.9) adj:1,361.3 + exact
TGAGGTAGTAGGTTGTATAGT 1,637(430.5/2,077.1) adj:545.7 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGTTGTATAG 303(79.7/384.5) adj:101 + lv3p|lv3pT|lv3p#-2
TGAGGTAGTAGGTTGTATAGTTA 125(32.9/158.6) adj:41.7 + nta#A|nta#A#1
TGAGGTAGTAGGTTGTATAGTTT 104(27.3/132) adj:34.7 + lv3p|lv3pE|lv3p#1
TGAGGTAGTAGGTTGTA 70(18.4/88.8) adj:17.5 + lv3p|lv3pT|lv3p#-5
TGAGGTAGTAGGTTGTATA 36(9.5/45.7) adj:12 + lv3p|lv3pT|lv3p#-3
TGAGGTAGTAGGTTGTATAGTA 23(6/29.2) adj:7.7 + nta#A|nta#A#1
CTATACAATCTACTGTCTTTC 15(3.9/19) adj:7.5 + exact
TGAGGTAGTAGGTTGTATAGA 14(3.7/17.8) adj:4.7 + nta#A|nta#A#1
CTATACAATCTACTGTCTTTCT 14(3.7/17.8) adj:7 + nta#T|nta#T#1
TGAGGTAGTAGGTTGT 13(3.4/16.5) adj:2.6 + lv3p|lv3pT|lv3p#-6
TGAGGGAGTAGGTTGTATAGTT 13(3.4/16.5) adj:4.3 + exactNucVar|5:T>G
TGAGGTAGTAGGTTGTAT 12(3.2/15.2) adj:3 + lv3p|lv3pT|lv3p#-4
TGAGGTAGTAGGTTGTATAGTTG 12(3.2/15.2) adj:4 + nta#G|nta#G#1
TGAGGTAGTAGGTTG 11(2.9/14) adj:2.2 + lv3p|lv3pT|lv3p#-7
TGAGGAAGTAGGTTGTATAGTT 10(2.6/12.7) adj:3.3 + exactNucVar|5:T>A
TGAGGTAGTGGGTTGTATAGTT 7(1.8/8.9) adj:2.3 + exactNucVar|9:A>G
TGAGGGAGTAGGTTGTATAGT 6(1.6/7.6) adj:2 + lv3p|lv3pT|lv3p#-1
TGAGGCAGTAGGTTGTATAGTT 5(1.3/6.3) adj:1.7 + exactNucVar|5:T>C
TGAGGCAGTAGGTTGTATAGT 4(1.1/5.1) adj:1.3 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGTTGTGTAGTT 4(1.1/5.1) adj:1 + exactNucVar|16:A>G
CTATACAATCTACTGTCTTT 4(1.1/5.1) adj:2 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGTTGTACAGTT 3(0.8/3.8) adj:0.8 + exactNucVar|11:T>G
TGAGGTAGTAGGTTGTATAGTG 3(0.8/3.8) adj:1 + nta#G|nta#G#1
TGAGGAAGTAGGTTGTATAGT 3(0.8/3.8) adj:1 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGTTGTATAGAA 3(0.8/3.8) adj:1 + nta#A|nta#A#2
TGAGGTAGTAGTTTGTATAGTT 3(0.8/3.8) adj:0.5 + exactNucVar|17:C>T
TGGGGTAGTAGGTTGTATAGT 2(0.5/2.5) adj:0.7 + lv3p|lv3pT|lv3p#-1
TGAGGTAGCAGGTTGTATAGTT 2(0.5/2.5) adj:0.5 + exactNucVar|8:T>C
TGAGGTAGTAGGGTGTATAGTT 2(0.5/2.5) adj:0.7 + exactNucVar|12:T>G
TGAGGTAGTAGGTTGTATTGTT 2(0.5/2.5) adj:0.4 + exactNucVar|18:A>T
TGAGGAAGTAGGTTGTATAG 2(0.5/2.5) adj:0.7 + lv3p|lv3pT|lv3p#-2
TGAGGTAGTAGGTTGTATAGTC 2(0.5/2.5) adj:0.7 + nta#C|nta#C#1
TGAGGTAGTAGGTTGTATAGCT 2(0.5/2.5) adj:0.7 + exactNucVar|20:T>C
TGAGGTAGTAGGTTGCATAGT 2(0.5/2.5) adj:0.5 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGTTGTGTAGT 2(0.5/2.5) adj:0.5 + lv3p|lv3pT|lv3p#-1
TGAGGTAGTAGGCTGTATAGTT 2(0.5/2.5) adj:0.7 + exactNucVar|12:T>C
TGAGGTAGTAGGTTGTATAGG 2(0.5/2.5) adj:0.7 + nta#G|nta#G#1
TGAGGTGGTAGGTTGTATAGTT 2(0.5/2.5) adj:0.7 + exactNucVar|6:A>G
TGAGGTAGTAGGTTGTATAGTAA 2(0.5/2.5) adj:0.7 + nta#A|nta#A#2
GAGGTAGTAGGTTGTATAGTT 2(0.5/2.5) adj:0.7 + lv5p|lv5pT|lv5p#-1
AGGTAGTAGGTTGTAT 2(0.5/2.5) adj:0.5 + mv
GGTAGTAGGTTGTATAGTT 2(0.5/2.5) adj:0.7 + lv5p|lv5pT|lv5p#-3
AGTAGGTTGTATAGTT 2(0.5/2.5) adj:0.7 + lv5p|lv5pT|lv5p#-6
GTAGGTTGTATAGTT 2(0.5/2.5) adj:0.7 + lv5p|lv5pT|lv5p#-7
CTATACAATCTACTGTCT 2(0.5/2.5) adj:1 + lv3p|lv3pT|lv3p#-3
CTATACAATCTACTGTC 2(0.5/2.5) adj:1 + lv3p|lv3pT|lv3p#-4