sRNAbench (batch mode)
RNA central parser
Genomic tRNA database parser
Remove duplicates from a fasta file
Extract Sequences from a fasta file
How to Cite
How to Cite sRNAbench
If you use the sRNAbench webserver, please cite our latest publication:
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
Please also consider citing:
sRNAtoolbox: an integrated collection of small RNA research tools.
sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments.
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
miRBase: integrating microRNA annotation and deep-sequencing data.
sRNAbench (batch mode):
Profiling of several small RNAs read files at once using sRNAbench
Data to upload
Paste SRA IDs (starting with SRR or ERR, one per line)
Paste URL/links with the files (one per line)
Link to Web Manual
Test Data Description
Secreted exosomes and cell fraction of a lymphoblastoid cell line (LCLs). Small RNAs of human and virus origin can be detected.
Link To Publication
Test Data Parameters
Or use SRA IDs:
Choose Reads File Input
There are 3 ways you can provide reads for sRNAbench to profile:
Upload read files (typically fastq or fastq.gz)
Provide links/URLs with your data (it will be downloaded and then profiled)
Provide accession for SRA runs (they start with SRR,ERR or DRR e.g.