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miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
miSRAdb automatic annotations
Experiments, taxonID and sample tag are searchable fields
Name Exp Study TaxonID SampleTag SampleTag2 LibraryInf Disease Method
Homo sapiens SRX10580761 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX8949664 SRP277559 9606 Resting human CD4+ T cells treatment: IFN I NEB NA NA
Homo sapiens SRX10580760 SRP314489 9606 Stool NA NEB NA NA
Mus musculus SRX2056709 SRP083078 10090 Heart tissue: Heart adapter_trimmed NA NA
Homo sapiens SRX8949663 SRP277559 9606 Resting human CD4+ T cells treatment: IFN I NEB NA NA
Homo sapiens SRX10580756 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580755 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580754 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580753 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580759 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580758 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX10580757 SRP314489 9606 Stool NA NEB NA NA
Homo sapiens SRX15209827 SRP374307 9606 HCT116 cell line: HCT116 Bioo NA NA
Mus musculus SRX2056711 SRP083078 10090 Heart tissue: Heart adapter_trimmed NA NA
Medicago truncatula SRX3703197 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Mus musculus SRX2056710 SRP083078 10090 Heart tissue: Heart adapter_trimmed NA NA
Medicago truncatula SRX3703196 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703195 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703194 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703193 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703192 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703191 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Medicago truncatula SRX3703190 SRP131849 3880 NA Genotype: Jemalong A17 adapter_trimmed NA Extract_protocol: Plant roots and nodules were harvested and crushed with liquid nitrogen. small RNA were isolated from 100 mg of powder with the mirVana miRNA isolation kit (Ambion) according to the manufacturer s instructions. For the other libraries, total RNAs were extracted using 1 mL of Trizol per 50-100 mg of powder. Phenol-Chloroform separation, isopropanol precipitation, ethanol wash and RNA solubilization were performed according to the TRI REAGENT manufacturer s instructions. RNA integrity and quality have been checked thanks to the Agilent Bioanalyzer 2100
Homo sapiens SRX8949659 SRP277559 9606 Resting human CD4+ T cells treatment: antiCD3/antiCD28 NEB NA NA
Homo sapiens SRX8949658 SRP277559 9606 Resting human CD4+ T cells treatment: antiCD3/antiCD28 NEB NA NA