miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
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| Name | Exp | Study | TaxonID | SampleTag | SampleTag2 | LibraryInf | Disease | Method |
|---|---|---|---|---|---|---|---|---|
| Homo sapiens | SRX2154263 | SRP078144 | 9606 | BREAST | karyotype: This is a hypotriploid human cell line. The modal chromosome number is 65 occurring at 50% and polyploidy at 0.8%. 18 marker chromosomes are common to most cells, of which 7 are paired and 11 are single-copied. The t(8q14q), t(9q17q), t(10q17p) are among 7 paired markers common to most cells. N7, N9, and N10 are absent and N11 is generally present in 4 copies. DMs occurred, but infrequently. Q-band examination did not show the presence of a Y chromosome | Illumina | DUCTAL CARCINOMA | NA |
| Rattus norvegicus | SRX9075439 | SRP280104 | 10116 | Adipose | treatment: Casein | Illumina | NA | NA |
| Homo sapiens | ERX8012540 | ERP135083 | 9606 | NA | INSDC status: public | adapter_trimmed | NA | NA |
| Homo sapiens | SRX2154264 | SRP078144 | 9606 | BRAIN | karyotype: This is a hypodiploid human cell line with the modal chromosome number of 44 occurring in 48% of cells. The rate of higher ploidy was 5.9%., Twelve markers were common to all cells, including der(1)t(1;3) (p22;q21), der(16)t(1;16) (p22;p12), del(9) (p13) and nine others. The marker der(1) had two copies in most cells. There was only one copy of normal X. N1, N6 and N9 were not found | Illumina | GLIOBLASTOMA; ASTROCYTOMA | NA |
| Homo sapiens | SRX2154269 | SRP078144 | 9606 | COLON | karyotype: The stemline modal chromosome number is 96, occurring at 16% with polyploidy at 3.2%. Ten common markers were detected i.e., t(1q;?), 10q-, t(11q17q) and 7 others. The t(1q17q) and M11 were found in a portion of cells. The ins(2), 10q-, and t(15q;?) were generally paired, and t(11q;17q) and t(21q;?) were mostly three-copied. Normal N9 was absent, and N21 was lost in some cells. One to 4 small acrocentric chromosomes were detected. No Y chromosome with bright distal q-band was detected by Q-observation | Illumina | ADENOCARCINOMA | NA |
| Rattus norvegicus | SRX9075437 | SRP280104 | 10116 | Liver | treatment: Casein | Illumina | NA | NA |
| Rattus norvegicus | SRX9075438 | SRP280104 | 10116 | Kidney | treatment: Casein | Illumina | NA | NA |
| Homo sapiens | SRX2154267 | SRP078144 | 9606 | COLON | karyotype: The stemline chromosome number is hypotriploid and 11-12 marker chromosomes were common. Both double minutes and dicentrics were observed in 8% of each metaphase examined | Illumina | ADENOCARCINOMA | NA |
| Homo sapiens | SRX2154268 | SRP078144 | 9606 | BREAST | tissue: BREAST | Illumina | ADENOCARCINOMA | NA |
| Rattus norvegicus | SRX9075436 | SRP280104 | 10116 | Brain | treatment: Casein | Illumina | NA | NA |
| Homo sapiens | SRX4029518 | SRP144441 | 9606 | Serum | condition: Healthy Subject | Illumina_2 | NA | NA |
| Rattus norvegicus | SRX9075431 | SRP280104 | 10116 | Adipose | treatment: Casein | Illumina | NA | NA |
| Gallus gallus | SRX25146569 | SRP500067 | 9031 | Embryo-trachea | tissue: Embryo-trachea | NEB | NA | NA |
| Homo sapiens | SRX4029519 | SRP144441 | 9606 | Plasma | condition: Healthy Subject | Illumina_2 | NA | NA |
| Homo sapiens | SRX2154261 | SRP078144 | 9606 | BREAST | karyotype: modal number = 93; range = 85 to 95. The cell line is aneuploid human female, with chromosome counts in the tetraploid range. Normal chromosomes N16 and N21 are least well represented, with from none to two copies per karyotype, while chromosome N7 tends to be over-represented, with four or five copies per karyotype, whereas two to four copies are found of most of the remaining normal chromosomes. Twenty-two marker chromosomes are found including: iso(1q), del(1)(q32), der(1)t(1;?)(p36;?), del(3)(q24), der(3)t(3;?)(q24;?), del(3)(p14p25), t(6q;21?) and others. Eight are identical to those reported or portrayed in the report by A.J. Langlois, et al | Illumina | CARCINOMA | NA |