miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
miSRAdb summary table.
TaxonIDs and scientific names are searchable terms
Species TaxonID Studies Samples Genus Family Order Class Phylum
Treponema denticola 158 1 1 Treponema Treponemataceae Spirochaetales Spirochaetia Spirochaetota
Helicobacter pylori 210 2 2 Helicobacter Helicobacteraceae Campylobacterales Epsilonproteobacteria Campylobacterota
Thermus thermophilus 274 1 2 Thermus Thermaceae Thermales Deinococci Deinococcota
Pseudomonas aeruginosa 287 1 3 Pseudomonas Pseudomonadaceae Pseudomonadales Gammaproteobacteria Pseudomonadota
Pseudomonas fluorescens 294 1 3 Pseudomonas Pseudomonadaceae Pseudomonadales Gammaproteobacteria Pseudomonadota
Sinorhizobium meliloti 382 1 4 Sinorhizobium Rhizobiaceae Hyphomicrobiales Alphaproteobacteria Pseudomonadota
Legionella pneumophila 446 2 3 Legionella Legionellaceae Legionellales Gammaproteobacteria Pseudomonadota
Acinetobacter baumannii 470 1 12 Acinetobacter Moraxellaceae Moraxellales Gammaproteobacteria Pseudomonadota
Neisseria gonorrhoeae 485 1 2 Neisseria Neisseriaceae Neisseriales Betaproteobacteria Pseudomonadota
Erwinia amylovora 552 1 3 Erwinia Erwiniaceae Enterobacterales Gammaproteobacteria Pseudomonadota
Escherichia coli 562 8 13 Escherichia Enterobacteriaceae Enterobacterales Gammaproteobacteria Pseudomonadota
Escherichia fergusonii 564 1 1 Escherichia Enterobacteriaceae Enterobacterales Gammaproteobacteria Pseudomonadota
Klebsiella pneumoniae 573 1 2 Klebsiella Enterobacteriaceae Enterobacterales Gammaproteobacteria Pseudomonadota
Yersinia pestis 632 1 1 Yersinia Yersiniaceae Enterobacterales Gammaproteobacteria Pseudomonadota
Vibrio cholerae 666 1 1 Vibrio Vibrionaceae Vibrionales Gammaproteobacteria Pseudomonadota