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miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
miSRAdb automatic annotations
Experiments, taxonID and sample tag are searchable fields
Name Exp Study TaxonID SampleTag SampleTag2 LibraryInf Disease Method
Cucumis sativus SRX10684498 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Oryza sativa Indica Group x Oryza sativa Japonica Group SRX826583 SRP051645 1050722 endospern tissue: endospern Illumina NA NA
Schmidtea mediterranea SRX9594897 SRP277000 79327 Whole animal tissue: Whole animal Illumina NA NA
Oryza sativa Indica Group x Oryza sativa Japonica Group SRX826581 SRP051645 1050722 endospern tissue: endospern Illumina NA NA
Schmidtea mediterranea SRX9594898 SRP277000 79327 Whole animal tissue: Whole animal Illumina NA NA
Schmidtea mediterranea SRX9594896 SRP277000 79327 Whole animal tissue: Whole animal Illumina NA NA
Cucumis sativus SRX10684491 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Cucumis sativus SRX10684492 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Homo sapiens SRX2154249 SRP078144 9606 SKIN karyotype: It is a hypotriploid with a modal number of 62 chromosomes. There are 9 marker chromosomes that are commonly found in each cell, and normal N2, N6, and N22 are present at one copy per cell Illumina MALIGNANT MELANOMA NA
Schmidtea mediterranea SRX9594899 SRP277000 79327 Whole animal tissue: Whole animal Illumina NA NA
Cucumis sativus SRX10684490 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Cucumis sativus SRX10684495 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Cucumis sativus SRX10684496 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Cucumis sativus SRX10684493 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Cucumis sativus SRX10684494 SRP316495 3659 roots tissue: roots adapter_trimmed NA NA
Homo sapiens SRX2154244 SRP078144 9606 BREAST tissue: BREAST Illumina FIBROCYSTIC DISEASE NA
Homo sapiens SRX2154247 SRP078144 9606 PANCREAS karyotype: Chromosome studies indicate a modal number of 63 with 3 distinct marker chromosomes and a small ring chromosome. This is a hypertriploid human cell line. The modal chromosome number was 61, occurring in 32% of cells., However, cells with 63 chromosomes also occurred at a high frequency (22%). The rate of cells with higher ploidies was 8.5% Illumina EPITHELIOID CARCINOMA NA
Homo sapiens SRX2154248 SRP078144 9606 BREAST karyotype: This human cell line has a hypertriploid chromosome number. The modal chromosome number was 72 occurring in 26% of the cells and the rate of higher ploidies was at 1.2%. Eighteen markers were common.They are: t(1q,?), M2,M3, del(3) (p21), der(5)t(5;?) (q35;?), del(6) (q21), t(11q14q), t(11;11) (p15;q11), der(14)t(2;14) (q21;q32), t(17q,?), M13, M14, M15, M16, M17, der(8)t(8;?), t(9p,?) and 19pt. Of these M13 was paired. Normal N14 was not found. N6 was single copied, X had 3 copies and N18 had 4 copies in each cell Illumina DUCTAL CARCINOMA NA
Homo sapiens SRX2154245 SRP078144 9606 BREAST karyotype: modal number = 82; range = 66 to 87. The stemline chromosome numbers ranged from hypertriploidy to hypotetraploidy, with the 2S component occurring at 1%. There were 29 to 34 marker chromosomes per S metaphase; 24 to 28 markers occurred in at least 30% of cells, and generally one large submetacentric (M1) and 3 large subtelocentric (M2, M3, and M4) markers were recognizable in over 80% of metaphases. No DM were detected. Chromosome 20 was nullisomic and X was disomic Illumina ADENOCARCINOMA NA
Rattus norvegicus SRX9075455 SRP280104 10116 Adipose treatment: Whole Egg Illumina NA NA
Rattus norvegicus SRX9075453 SRP280104 10116 Liver treatment: Whole Egg Illumina NA NA
Rattus norvegicus SRX9075454 SRP280104 10116 Kidney treatment: Whole Egg Illumina NA NA
Oryza sativa Indica Group x Oryza sativa Japonica Group SRX826599 SRP051645 1050722 seedling tissue: seedling Illumina NA NA
Rattus norvegicus SRX9075452 SRP280104 10116 Brain treatment: Whole Egg Illumina NA NA
Oryza sativa Indica Group x Oryza sativa Japonica Group SRX826597 SRP051645 1050722 seedling tissue: seedling adapter_trimmed NA NA