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miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
miSRAdb automatic annotations
Experiments, taxonID and sample tag are searchable fields
Name Exp Study TaxonID SampleTag SampleTag2 LibraryInf Disease Method
Homo sapiens ERX8012561 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens ERX8012562 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Rattus norvegicus SRX9075415 SRP280104 10116 Adipose treatment: Casein Illumina NA NA
Homo sapiens ERX8012560 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Rattus norvegicus SRX9075413 SRP280104 10116 Liver treatment: Casein Illumina NA NA
Rattus norvegicus SRX9075414 SRP280104 10116 Kidney treatment: Casein Illumina NA NA
Homo sapiens SRX2154280 SRP078144 9606 LUNG karyotype: Modal number = 79; range = 71 to 83 This is a hypertriploid human cell line with the modal chromosome number of 79, occurring in 20% of cells. The rate of cells with a higher ploidy was 5.5%. Karyotypes were very complex. There were over 22 marker chromosomes commonly present in most cells, many with complex structural rearrangements. Among these markers were: double copies for t(10qter--10q11.2::?::13C--13qter) and der(9)t(3;9) (p12;p22?), and one copy each for del (1) (p22) and i (iq). There were two normal X chromosomes per cell. Normal chromosomes Y, N1, N5, N14, and N15 were not found. Chromosomes N20 and N22 generally had four or more copies per cell Illumina ADENOCARCINOMA NA
Rattus norvegicus SRX9075412 SRP280104 10116 Brain treatment: Casein Illumina NA NA
Homo sapiens SRX2154281 SRP078144 9606 BREAST karyotype: CRL-2336 is highly transformed which is evident from the chromosome count and karyotype description. The modal chromosome number is 100. At least forty-three marker chromosomes, involving nearly every chromosome, were found. Chromosome 1 and chromosome 3 derivative chromosomes were verified using commercial whole chromosome paint (fluorescent in-situ hybridization (FISH)) probes. An acrocentric chromosome with an extra C-band at qter was detected (2 copies per metaphase). There were no normal X chromosomes however at least one derivative X was seen in each cell. The absence of a Y chromosome was verified by QM staining and C-bands. Normal copies of N1, N4, N15, N16 and N18 were absent. More detailed cytogenetic information is available upon request Illumina PRIMARY DUCTAL CARCINOMA NA
Homo sapiens SRX2154282 SRP078144 9606 PROSTATE karyotype: At passage 32, a majority of the cells were in the diploid range (45-51) with two main populations: 45, X,-Y and 51, XY Illumina NORMAL NA
Homo sapiens SRX4029545 SRP144441 9606 Serum condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029546 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029543 SRP144441 9606 Serum condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029544 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029549 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029547 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens SRX4029548 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens ERX8012569 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens ERX8012567 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens SRX4029541 SRP144441 9606 Serum condition: Healthy Subject Illumina_2 NA NA
Homo sapiens ERX8012568 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens SRX4029542 SRP144441 9606 Plasma condition: Healthy Subject Illumina_2 NA NA
Homo sapiens ERX8012565 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens ERX8012566 ERP135083 9606 NA INSDC status: public adapter_trimmed NA NA
Homo sapiens SRX4029540 SRP144441 9606 Serum condition: Healthy Subject Illumina_2 NA NA