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miSRA: search preprocessed public small-RNA data against your reference sequences (miRNA, tRNA, etc)
ugr
miSRAdb automatic annotations
Experiments, taxonID and sample tag are searchable fields
Name Exp Study TaxonID SampleTag SampleTag2 LibraryInf Disease Method
Oncorhynchus mykiss SRX3898681 SRP137829 8022 Liver genotype: wild type Illumina NA NA
Arabidopsis thaliana SRX5213680 SRP176450 3702 inflorescence genotype: ZF_in_Col-0 Illumina NA NA
Mus musculus SRX15763811 SRP382170 10090 liver genotype: ApcDHep Qiagen_UMI NA NA
Mus musculus SRX15763810 SRP382170 10090 liver genotype: ApcDHep Qiagen_UMI NA NA
Mus musculus SRX15763812 SRP382170 10090 liver genotype: ApcDHep Qiagen_UMI NA NA
Heligmosomoides polygyrus bakeri SRX4394664 SRP153922 375939 Input pellet treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen) Illumina NA treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen)
Arabidopsis thaliana SRX5213669 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_fwa Illumina NA NA
Heligmosomoides polygyrus bakeri SRX4394663 SRP153922 375939 Extracellular vesicles treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen) Illumina NA treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen)
Arabidopsis thaliana SRX5213668 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_fwa Illumina NA NA
Heligmosomoides polygyrus bakeri SRX4394666 SRP153922 375939 Input supernatant treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen) Illumina NA treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen)
Heligmosomoides polygyrus bakeri SRX4394665 SRP153922 375939 Input pellet treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen) Illumina NA treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen)
Caenorhabditis elegans SRX4394668 SRP153922 6239 Adult worms treatment protocol: Nematodes were harvested from the plates and flash frozen. Illumina NA treatment protocol: Nematodes were harvested from the plates and flash frozen.
Heligmosomoides polygyrus bakeri SRX4394667 SRP153922 375939 Input supernatant treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen) Illumina NA treatment protocol: Nematodes were disrupted in 700 µl of Qiazol (Qiagen) using mechanical disruption with 5 mm stainless steel beads (Qiagen) on a Tissue Lyser II (30hz for 2 min twice; Qiagen)
Caenorhabditis elegans SRX4394669 SRP153922 6239 Adult worms treatment protocol: Nematodes were harvested from the plates and flash frozen. Illumina NA treatment protocol: Nematodes were harvested from the plates and flash frozen.
Oncorhynchus mykiss SRX3898659 SRP137827 8022 Liver genotype: wild type Illumina NA NA
Arabidopsis thaliana SRX5213672 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_Col-0 Illumina NA NA
Oncorhynchus mykiss SRX3898658 SRP137827 8022 Liver genotype: wild type Illumina NA NA
Arabidopsis thaliana SRX5213671 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_fwa_x_nrpd1 Illumina NA NA
Arabidopsis thaliana SRX5213674 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_Col-0 Illumina NA NA
Arabidopsis thaliana SRX5213673 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_Col-0 Illumina NA NA
Caenorhabditis elegans SRX4394671 SRP153922 6239 Adult worms treatment protocol: Nematodes were harvested from the plates and flash frozen. Illumina NA treatment protocol: Nematodes were harvested from the plates and flash frozen.
Arabidopsis thaliana SRX5213676 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_Col-0 Illumina NA NA
Caenorhabditis elegans SRX4394670 SRP153922 6239 Adult worms treatment protocol: Nematodes were harvested from the plates and flash frozen. Illumina NA treatment protocol: Nematodes were harvested from the plates and flash frozen.
Arabidopsis thaliana SRX5213675 SRP176450 3702 inflorescence genotype: DMS3-ZF_in_Col-0 Illumina NA NA
Caenorhabditis elegans SRX4394673 SRP153922 6239 Adult worms treatment protocol: Nematodes were harvested from the plates and flash frozen. Illumina NA treatment protocol: Nematodes were harvested from the plates and flash frozen.